Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g02050 | ATGGAGGAATCTCAGTACTTGATGTGGATGAAGAGGAAACAAATCTTGAAGTCACATATTCAAGCACCATTTCACAACAACTCTAATTGGGAGGAAAGGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGCATATGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTAGGGGGTCACATGAATGTTCACAGAAGGGACAGAGCTAGGCTCAAACAAAGTCATAGCCACCATAATGAAGCCCTTCATTATCATCACAAAAATGATTCAGTTATTGCAACAAGCAGCCTCTCACCTTCTAGGCCCTCAACACAAGAAAATTGTTGTCAACCTGCCATGTTGTCTCCTTATTCTGCTTCAATTAGCTGGGGGCACCATATGGGGTGTCCTGATTCAGAACCAAAAGGGCTAGTCAATGCAAAGGAAGAGTTTTTAAAAGGTTTGGATTGTAATGATTATGTTGAGACAAGTTTGTCTGTGGGACAAAATTTGGTGTTTGGCCAAAAATTGCCAACTGATTCATGTGGGGATGAAGGCATCAGTTATAAAAGACCAAAGACTTCTATTTCTTCCCTGCCTGTCTTCCTCAAACCATGTTCAACAAATGATAGATGCCTCACTTTCCAGTCTGCAGAATTTGTACTTGGACTTAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTTAG | 744 | 0.422 | MEESQYLMWMKRKQILKSHIQAPFHNNSNWEERAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQSHSHHNEALHYHHKNDSVIATSSLSPSRPSTQENCCQPAMLSPYSASISWGHHMGCPDSEPKGLVNAKEEFLKGLDCNDYVETSLSVGQNLVFGQKLPTDSCGDEGISYKRPKTSISSLPVFLKPCSTNDRCLTFQSAEFVLGLKPGMEDLDLELRLGKPQKV. | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g02050 | 247 | Pfam | C2H2-type zinc finger | 53 | 77 | - | - | |
Seca5g02050 | 247 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 80 | IPR036236 | - | |
Seca5g02050 | 247 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
Seca5g02050 | 247 | Gene3D | Classic Zinc Finger | 50 | 109 | - | - | |
Seca5g02050 | 247 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 80 | IPR013087 | - | |
Seca5g02050 | 247 | PANTHER | OS07G0101800 PROTEIN | 25 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g02050 | Seca-Chr5 | 58951142 | 58953098 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g02050 | 1 | 247 | C2H2 Transcription Factor Family | AT5G06070 | 34.091 | 2.70e-25 | 97.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca5g02050 | zf-C2H2_6 | 3.8e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g02050 | - | - | aprc:113851273 | 392.889 |