Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02050 ATGGAGGAATCTCAGTACTTGATGTGGATGAAGAGGAAACAAATCTTGAAGTCACATATTCAAGCACCATTTCACAACAACTCTAATTGGGAGGAAAGGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGCATATGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTAGGGGGTCACATGAATGTTCACAGAAGGGACAGAGCTAGGCTCAAACAAAGTCATAGCCACCATAATGAAGCCCTTCATTATCATCACAAAAATGATTCAGTTATTGCAACAAGCAGCCTCTCACCTTCTAGGCCCTCAACACAAGAAAATTGTTGTCAACCTGCCATGTTGTCTCCTTATTCTGCTTCAATTAGCTGGGGGCACCATATGGGGTGTCCTGATTCAGAACCAAAAGGGCTAGTCAATGCAAAGGAAGAGTTTTTAAAAGGTTTGGATTGTAATGATTATGTTGAGACAAGTTTGTCTGTGGGACAAAATTTGGTGTTTGGCCAAAAATTGCCAACTGATTCATGTGGGGATGAAGGCATCAGTTATAAAAGACCAAAGACTTCTATTTCTTCCCTGCCTGTCTTCCTCAAACCATGTTCAACAAATGATAGATGCCTCACTTTCCAGTCTGCAGAATTTGTACTTGGACTTAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTTAG 744 0.422 MEESQYLMWMKRKQILKSHIQAPFHNNSNWEERAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQSHSHHNEALHYHHKNDSVIATSSLSPSRPSTQENCCQPAMLSPYSASISWGHHMGCPDSEPKGLVNAKEEFLKGLDCNDYVETSLSVGQNLVFGQKLPTDSCGDEGISYKRPKTSISSLPVFLKPCSTNDRCLTFQSAEFVLGLKPGMEDLDLELRLGKPQKV. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02050 247 Pfam C2H2-type zinc finger 53 77 - -
Seca5g02050 247 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Seca5g02050 247 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Seca5g02050 247 Gene3D Classic Zinc Finger 50 109 - -
Seca5g02050 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Seca5g02050 247 PANTHER OS07G0101800 PROTEIN 25 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02050 Seca-Chr5 58951142 58953098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02050 1 247 C2H2 Transcription Factor Family AT5G06070 34.091 2.70e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g02050 zf-C2H2_6 3.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02050 - - aprc:113851273 392.889