Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02045 ATGGCGAATCGTTGGTGGGCTGGGAATGTGGGTATGAGACAAACGGATTCGATGTCACCATCTCCATCACTTCAACTAAGAAGAGAGCAAGAATTCATGGATAACAACAACAACACCAACTCAACTCAGACTAACAGCAGCAACAGCAACACCAACGCGGAGGAAGAAGAGAGCCGAGACGACAACAACAACAACAACGCTGGTTCGGAGCCAGGAAGCAGCGGTCGAAGGCCACGTGGCAGGCCACCAGGTTCAAAGAACAAGCCCAAACCACCCATCGTGATAACCAAGGAAAGCCCCAACGCGCTCCGAAGCCACGTGTTGGAAATCACAAGCGGAAGTGACGTGGCGGAGAGCATCGCTACCTTCGCTAACCGTCGCCACCGTGGTGTGTCGGTGCTGAGTGGGAGTGGCATTGTCACGAATGTCACCCTTCGACAACCGGCTGCTCCTGGTGGGATTATCACTCTCCATGGAAGGTTCGAGATACTTTCACTATCCGGTGCGTTTCTGCCTTCACCTTCTCCACCTGGGGCCACTGGACTCACTGTTTACTTAGCCGGTGGTCAGGGTCAGGTTGTTGGTGGTTCCGTGGCTGGTTCATTGGTAGCTTCAGGGCCTGTGATGGTGATAGCAGCTACTTTTGCGAATGCTACTTATGAGAGGTTGCCGTTAGAGGAAGAACAAACTGAGGAGGAAATGCAAGTTCAGCAGCAGCAACAGCAGCAATCAGGAGTGAATTCAACAACTGTTGGAACTAGTACTCCAGCTTCTCAAGGCTTAGGTGAACAACCACAACAACAACAGGTTTCAATGCCAATGTATAATTTGCCTCCAAATTTGATACACAATGGTCAGACTCAGATGCCTCATGATGTGTTCTGGGGCCATCCACCGCGTCCTCCTCCTTCTTTCTGA 918 0.5131 MANRWWAGNVGMRQTDSMSPSPSLQLRREQEFMDNNNNTNSTQTNSSNSNTNAEEEESRDDNNNNNAGSEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEITSGSDVAESIATFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGIITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGSVAGSLVASGPVMVIAATFANATYERLPLEEEQTEEEMQVQQQQQQQSGVNSTTVGTSTPASQGLGEQPQQQQVSMPMYNLPPNLIHNGQTQMPHDVFWGHPPRPPPSF. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02045 305 ProSiteProfiles PPC domain profile profile. 100 237 IPR005175 -
Seca5g02045 305 MobiDBLite consensus disorder prediction 234 287 - -
Seca5g02045 305 MobiDBLite consensus disorder prediction 1 100 - -
Seca5g02045 305 FunFam AT-hook motif nuclear-localized protein 103 231 - -
Seca5g02045 305 CDD DUF296 104 215 IPR005175 -
Seca5g02045 305 Gene3D - 103 245 - -
Seca5g02045 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 216 IPR005175 -
Seca5g02045 305 MobiDBLite consensus disorder prediction 227 305 - -
Seca5g02045 305 PIRSF ESCAROLA 13 304 IPR014476 GO:0003680
Seca5g02045 305 MobiDBLite consensus disorder prediction 10 52 - -
Seca5g02045 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 230 - -
Seca5g02045 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 298 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02045 Seca-Chr5 58777631 58778569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02045 1 305 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 54.154 5.27e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02045 - - qsu:112039774 338.576