Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02042 ATGCTTCTTCTCTGTTTCCTGATTCTTCTGGCCTCTAACCCTGTAAAATCCCAGCATGATGAGCTGTTCTTTGATGGGTTCCATGGTGCTGCAACCAACATAAGCTTAAACGGAGTTGCAGTGATTGAGCGCAGGGGCATACTTCGCTTAACAAACGAAACTCAAAGAGTAATTGGGCATGCGTTTTATTCAACCCCAATCCAGTTCAAGAACTCTTCCACCAACGCCAAAGTTGTTTTTGCAATAATCCCCCAGTACCCAAAACTTGGGGGACATGGCTTTGCCTTCACAATTTCACGCTCCAAGCTGCTTCCAGGTGCATATCCCAGCCAGTACCTGGGCCTCCTCAACCCAAACGATGTGGGGAACTTCTCAAACCACCTTTTCGCTGTAGAATTCGACACTGTCCAAGACTACGAATTCAATGACATCAATGGCAACCATGTGGGTATCAACCTGAATAACATGGCATCCAACAAATCAGTTGAAGCTGGTGTTTTCTCTGATGAGTCAAAGAATAAGCAAGACCTCAATTTGAAGAGTGGCAAGGTGATTCAAGCATGGGTGGACTATGATTCCCCCAGGAATCAATTGGAAGTTAGACTCTCCCTAACTTCTACAAAACCCACTTCCCCAATCTTATCATACCAAGTGGATCTCTCACCAATTCTAGAAGACTCTATGTATGTGGGGTTCTCTGCTTCAACAGGGTTGCTTGCGAGTTGGCACTATATCTTAGGTTGGAGCTTCAAGATAAATGGAGAGGCAAAAACCCTGTCTTTGGAAAATCTCCCTTCGCTCTCTGCTCACAGTAACACTAAAAAAGCCTTAATCTTGGGACTCTCTCTTTCCGTTACGATTCTAATACTTGCCACAATTGGGTTAGCACTTTACCTTAATTGGAAAAACGCTGATGTGATCGAAGCTTGGGAGTTAGATATTGGTCCCCACAGATTTCCCTACAAAGAACTGAAACAAGCCACAAGAGGATTCAAAGACAAGAACCTTCTCGGTTTCGGTGGATTCGGTAAAGTTTACAAAGGGGTGCTCCCAAATTCCAACACCGAAATCGCCGTGAAGCGAATTTCCCACGAATCAAAACAGGGGTGGCAACAATTTATCTCAGAAATCGCCACCATTGGCAGGCTCCGCCACAGGAACCTTGTACAGTTACTAGGTTGGTGTCGAAAGCATAACGATCTACTCTTAGTCTACGATTTCATGCACAACGGTAGCTTAGACAAGTACCTGTTCGATGAAGAACCAAGAGGAAAATTGAGCTGGGAGCAAAGGTTCAAGATCATAAAAGGGGTGGCTTCAGGGCTTGTTTATTTGCACGAGGAATGGGAACAAACGGTGATTCACAGAGACATTAAAGCAGGGAACGTTCTTTTGGATGCTGAAATGAATGGTAGGCTTGGGGACTTTGGTTTGGCGAAGCTATACGATCATGGTTCGAACCCAAGCACGACGAGGGTTGTGGGAACGTTGGGGTATTTGGCGCCTGAGCTCACGCGCACGGGGAAACCCACGACGAGTTCTGATGTGTTTGCGTTTGGCGCGTTGTTGTTGGAGGTCGTGTGTGGGAGAAGGCCCATTGAGCCCAAAGCGTTGCCGGAGGAGCTTATTTTGGTGGATTGGGTGTGGGATCGGTGGCGCGTGGGGGCGGCGTTGGAGGTTGTGGACCCCAAGTTGGGTGGGATTTTCGATGAGGTGGAGGCGTTGTTGGTGATACAGGTGGGGTTGTTGTGCTCCGATGAGAATCCGGAAGCGAGGCCCACCATGAGGCAGGTGGTGAGGTACTTGGAAGGGGAGGTGCCGCCGCCGGAGCTGCAGGCGTTTGATGGGAAGAAGGGTTGTGGGGTCGCCGTTAGTGGCGGTGGTGAGTTTGACGATTTTGTGCATTCGTATCCGACGTCGTTTTATGACAGAGCGAATACGTGGTCGTCGGTGGGTGATGACGTGGAGTGTGGATCTGCTTCGTCTCTCTCTCTTTCCGGTGCCAGGGAGGAGGGTAGGTAG 2022 0.4866 MLLLCFLILLASNPVKSQHDELFFDGFHGAATNISLNGVAVIERRGILRLTNETQRVIGHAFYSTPIQFKNSSTNAKVVFAIIPQYPKLGGHGFAFTISRSKLLPGAYPSQYLGLLNPNDVGNFSNHLFAVEFDTVQDYEFNDINGNHVGINLNNMASNKSVEAGVFSDESKNKQDLNLKSGKVIQAWVDYDSPRNQLEVRLSLTSTKPTSPILSYQVDLSPILEDSMYVGFSASTGLLASWHYILGWSFKINGEAKTLSLENLPSLSAHSNTKKALILGLSLSVTILILATIGLALYLNWKNADVIEAWELDIGPHRFPYKELKQATRGFKDKNLLGFGGFGKVYKGVLPNSNTEIAVKRISHESKQGWQQFISEIATIGRLRHRNLVQLLGWCRKHNDLLLVYDFMHNGSLDKYLFDEEPRGKLSWEQRFKIIKGVASGLVYLHEEWEQTVIHRDIKAGNVLLDAEMNGRLGDFGLAKLYDHGSNPSTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEPKALPEELILVDWVWDRWRVGAALEVVDPKLGGIFDEVEALLVIQVGLLCSDENPEARPTMRQVVRYLEGEVPPPELQAFDGKKGCGVAVSGGGEFDDFVHSYPTSFYDRANTWSSVGDDVECGSASSLSLSGAREEGR. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02042 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Seca5g02042 673 Gene3D - 21 253 - -
Seca5g02042 673 SUPERFAMILY Protein kinase-like (PK-like) 312 609 IPR011009 -
Seca5g02042 673 CDD STKc_IRAK 337 604 - -
Seca5g02042 673 SMART serkin_6 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02042 673 Pfam Legume lectin domain 23 264 IPR001220 GO:0030246
Seca5g02042 673 Gene3D Transferase(Phosphotransferase) domain 1 408 614 - -
Seca5g02042 673 PANTHER - 12 607 - -
Seca5g02042 673 FunFam L-type lectin-domain containing receptor kinase S.4 18 258 - -
Seca5g02042 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 267 IPR013320 -
Seca5g02042 673 ProSiteProfiles Protein kinase domain profile. 331 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02042 673 Pfam Protein kinase domain 331 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02042 673 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Seca5g02042 673 CDD lectin_legume_LecRK_Arcelin_ConA 24 254 IPR001220 GO:0030246
Seca5g02042 673 Gene3D Phosphorylase Kinase; domain 1 316 407 - -
Seca5g02042 673 FunFam L-type lectin-domain containing receptor kinase S.4 408 614 - -
Seca5g02042 673 FunFam Lectin-domain containing receptor kinase A4.3 316 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02042 Seca-Chr5 58636505 58638547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02042 15 667 Receptor kinase-like Gene Family AT3G55550 59.496 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca5g02042 Pkinase 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02042 - - gmx:100787552 959.518