Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02039 ATGACAACAAACACTGAGGAGTCATGTATGAACAATGTTGATGGTGAAAATGAGGTATCTCGTGACATTGAACATATGGATGAATATTATGACCATGGTGGGAGTTCAGATGATGTTGGTGAAGGCATACATTATGGCAATGAAGGTGGTCATTTATGTGAGGAAAATGGGGAAGATGTTGAAGATGAAGAGGATGGAGAGGATGGTGAAGATTGGGATGACGGAGAAGAAGATGGGGAGGATGGTGAGGAAGAAGATGGTGAAGAAGATGAAGATGGTGAAGAAGATGAGGATGGCATGGATTCAAATGCAAAATTTGTACACAGTGATGGAAGTAATGATATTGCAATTAATGGTTTGGAGGACATGGGCATTATTAAATTCAAACACTTGACTCCAGATGAGGCAATGAGATATCACTTTCCATATCGTGAGGTTGCCTTTCAGTTTTACAGGTTCTATGCACGGATGAATGGATTTTCAGCTCGCAAAGACAGGACTGTACGTAACAAGAATTTAGAAGTAATTCAACAAACATTTGTCTGCTATAGGGAAGGGAAGAGAACAGAAAATTTTAGAAAAGGGAAAAAACGGAAACGTCAAGCAAGGAAAACAACAAGGTGTGAGTGTAAAGCCAAATGTCAAGTTCATATATACCATGGCAATAACCGATGGTATATTAAATTTTTGCAGCCTACACATAACCACTTACTACTACATAATAAGCATACTGGGTTGCTACCTGCTTTTAGGAGAATGAGTGGGGGTCAGATTGATGAAATGATGAAGTTAAGGAAAGTGGGTATTAGTACTCCACATATATATGGCTCATTTGCTAATGAAATTGGTGGGTATGAAAATTTGGGATTTCGAAAGCAAGACATGTATAATGAAATAGATAAGCAACGCCATAAGTATATTTTAGATGTAAGAGGTGCATTACGTTACTTACAAAGTTTGAGAACCAATGATGCTTACATGTATTGGAAGTACAGAAGAGATGGGCAGGGTAGACTGGAGCATTTGTTTTGGAGTGATGGTCGTAGTCAAAGTGATTATTCAATATTTGGTGATGTGTTGGCATTTGACACAACATACAGAAAGAACAAATACAGTTGTCCTCTGGTGGTATTTTTTGGGTTGAATCATCACAACCAATCAATCATATTTGGTAGTGCCATAGTTTCTAATGAAATTGAAGAAACTTATGTGTGGTTGCTTCAACAGTTCTTAGATTTAATGAAGGGTAAAATGCCAGTTTCTGTTATCACAGATGGGGATCTAGCCATGAAGAATGCAATTAAAATTGTGTTTCCTAGAGCCCACCATAGGTTATGTGCATGGCACCTGTTACGCAATGCTACAAGCAATGTGGGGAATCCCAAGTTTGCAAATCTATTCAAAAGGTGCATGTTGGGAGACTATGAGATTGGTGAATTTGAGACAAAGTGGAATGATATGGTTGAAGAATGTGGTCTTGGAAACAATGACTGGGTCAGGGAGTTGTATGACAGGAGGCAGATGTGGGCCACTGCACATATTCGTGGTAATTTTTTTGATGGGTTTAGGACCACCTCACGTGTGGAGGGTTTGCATGCATTGTTAGCTAAATATGTTAATTTTTGGAATAATTTGACTGAATTCTTGGAGCATTATACTCGTTGTTTAAGTCAAATCCGATTCAGGGAGACAGAGGCTGACTTTGCTTCACTCCACTGTGAAGAGGTTTTGGAAACTCCTTTGCAGGCATTAGAGAGGTCAGATTCAAATTTGTATATAAAGAACATATTTGTGTTGTTCCGTATTGTGCTACAAAGCGCGTTAAAGACCAGGGTGGTTAATGAAAAGCGTGCTCCATCATGTTTCATTTACTTTGTGTCTAAGTATTGTAGGCAGGGCAAGGAGTGGCATGTTTGTTTTTGGCCATCAAGCATGGATATGAAATGTTCCTGTAAGCGAATGGAGTCCATTGGTATACCTTGTGAGCATTTACTTGTTGTCATGGTTTACTTAGACATGGTGGACATACCTGATTCTTTGGTATTGGATAGGTGGACAAAGAAAGAAAAGGGATCAGTTTATGATGTAGAGTCTGCTTGTGGTGATCCATTAAAGGTATGTCGTTATGAGGCATTAAGACAAAGTTTTTGGCGTTTGCAAAAGGTGGGGTGGATCAACCCAGAAGATTTTGCAGAAACACAGTCCATGCTCTTAGCCCAATGTGAGAAACTTGAAGCCAAGCATGGGAGACAAGAGATCCCCACCTTACAAGAGATCCACACGTTGTCAAAACCAAAGGATGTAGACTGA 2310 0.3944 MTTNTEESCMNNVDGENEVSRDIEHMDEYYDHGGSSDDVGEGIHYGNEGGHLCEENGEDVEDEEDGEDGEDWDDGEEDGEDGEEEDGEEDEDGEEDEDGMDSNAKFVHSDGSNDIAINGLEDMGIIKFKHLTPDEAMRYHFPYREVAFQFYRFYARMNGFSARKDRTVRNKNLEVIQQTFVCYREGKRTENFRKGKKRKRQARKTTRCECKAKCQVHIYHGNNRWYIKFLQPTHNHLLLHNKHTGLLPAFRRMSGGQIDEMMKLRKVGISTPHIYGSFANEIGGYENLGFRKQDMYNEIDKQRHKYILDVRGALRYLQSLRTNDAYMYWKYRRDGQGRLEHLFWSDGRSQSDYSIFGDVLAFDTTYRKNKYSCPLVVFFGLNHHNQSIIFGSAIVSNEIEETYVWLLQQFLDLMKGKMPVSVITDGDLAMKNAIKIVFPRAHHRLCAWHLLRNATSNVGNPKFANLFKRCMLGDYEIGEFETKWNDMVEECGLGNNDWVRELYDRRQMWATAHIRGNFFDGFRTTSRVEGLHALLAKYVNFWNNLTEFLEHYTRCLSQIRFRETEADFASLHCEEVLETPLQALERSDSNLYIKNIFVLFRIVLQSALKTRVVNEKRAPSCFIYFVSKYCRQGKEWHVCFWPSSMDMKCSCKRMESIGIPCEHLLVVMVYLDMVDIPDSLVLDRWTKKEKGSVYDVESACGDPLKVCRYEALRQSFWRLQKVGWINPEDFAETQSMLLAQCEKLEAKHGRQEIPTLQEIHTLSKPKDVD. 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02039 769 SMART 26again6 647 674 IPR006564 GO:0008270
Seca5g02039 769 ProSiteProfiles Zinc finger SWIM-type profile. 624 672 IPR007527 GO:0008270
Seca5g02039 769 MobiDBLite consensus disorder prediction 1 111 - -
Seca5g02039 769 MobiDBLite consensus disorder prediction 1 15 - -
Seca5g02039 769 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 139 729 IPR031052 GO:0006355
Seca5g02039 769 MobiDBLite consensus disorder prediction 17 38 - -
Seca5g02039 769 Pfam FAR1 DNA-binding domain 149 239 IPR004330 -
Seca5g02039 769 MobiDBLite consensus disorder prediction 55 99 - -
Seca5g02039 769 Pfam MULE transposase domain 359 453 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02039 Seca-Chr5 58525291 58529076 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02039 MULE 3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02039 - - tpra:123905832 713.375