Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02037 ATGATGTCTTCAGGGACATCTTCATATTGGTGCTACAGGTGCAGTCGGTTCGTGAGGGTCTGGAGACAGGACACGGTGGTTTGCCCTGATTGCGACGGTGGATTCATCGAGGAGATTGAACATCCGGCACGCTCAGTCCACGTGGATGGCCGGCGGCGAAGGTTTCCGGCGGCGGCGATGTACATGATCGGCCAACGCCCCGGTTCCGACCAAAACTCTCGCCCTGCTGCTCTCCGGCGAACCCGCCGGAACGGCGGTGACCGGTCGCCTTTCAATCCGGTGATCGTCCTCCGTGGCGGTGGATCGGCGGAGGGTACTGAAGGAGAGGGTCGTGGGTTCGAGCTTTTCTATGATGACGGTGCTGGTTCTGGTCTTAGGCCTTTGCCTCCAAGCATGTCAGAGTTTCTTCTGGGATCTGGATTTGATAGATTATTGGAACAGCTTTCTCAGATTGAGATCAACGGTATTGGGAGGTACGAGCACCCTCCTGCATCAAAAGCTGCTATTGATTCATTACCCACTATTGAGATTGATGAGAGTCATTTGGCCATGGAATCTCACTGTGCTGTTTGTAAAGAGCCTTTTGAGTTGGGAACCGCAGTGAGGGAAATGCCTTGTAAGCACATATACCATTCTGAATGTATCTTGCCATGGCTTGCACTTCACAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGCTGATGCACCAAATCCACCCCCAACAGGGCAATCCCTTGCCTTGAATGAGGAAGAAAATGTGGGGTTAACTATTTGGAGGTTACCTGGTGGTGGCTTTGCAGTGGGGAGGTTTTCTGGTGGGAGAAGAGGTGCTGAGAGGGAACTTCCTGTTGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGTGAGCCTAGGAGGATTTCTTGGTCTTCAAGGGGGAATAGAGGAAGAGAGAGTGGTGGGTTTCAAAGGTTGTTCAGGAATTTGTTTGGTTGTTTCAGAGGTGGGAGTGGAAGTGGAACTCAACACTCTAGTTCTAGTAGAGGAGAATCTAGAACTTTAAGGGCAAGTTCATCTCGTTCAAGTATGGATCCCTCACCTCGTTCTCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGAGCATGGTGA 1140 0.5096 MMSSGTSSYWCYRCSRFVRVWRQDTVVCPDCDGGFIEEIEHPARSVHVDGRRRRFPAAAMYMIGQRPGSDQNSRPAALRRTRRNGGDRSPFNPVIVLRGGGSAEGTEGEGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDESHLAMESHCAVCKEPFELGTAVREMPCKHIYHSECILPWLALHNSCPVCRHELPADAPNPPPTGQSLALNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGFQRLFRNLFGCFRGGSGSGTQHSSSSRGESRTLRASSSRSSMDPSPRSRRTWSMDVNSGMRAW. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02037 379 MobiDBLite consensus disorder prediction 332 371 - -
Seca5g02037 379 SMART ring_2 188 228 IPR001841 -
Seca5g02037 379 Pfam Ring finger domain 187 229 IPR001841 -
Seca5g02037 379 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Seca5g02037 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 233 - -
Seca5g02037 379 SUPERFAMILY RING/U-box 168 241 - -
Seca5g02037 379 MobiDBLite consensus disorder prediction 65 107 - -
Seca5g02037 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Seca5g02037 379 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Seca5g02037 379 MobiDBLite consensus disorder prediction 296 315 - -
Seca5g02037 379 Pfam Protein of unknown function (DUF1117) 254 358 IPR010543 -
Seca5g02037 379 CDD RING-H2_RNF126-like 188 229 - -
Seca5g02037 379 MobiDBLite consensus disorder prediction 332 379 - -
Seca5g02037 379 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02037 Seca-Chr5 58496585 58497724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02037 127 235 C3H Transcription Factor Family AT5G01980 43.119 1.38e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02037 K11982 - gmx:100807324 625.165