Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02033 ATGATACACTTACTTTTGTTTAATCCCATTTTTTTCCCTTTTCAGAGCAATTACATACATGCTTCGATAGGGAGAAATATTGCTCATAAGTTCAAGCCTCTTCTAAAGGAAGGAAAAATTTACACCATTAAAAATTTTGAGGTGACAAACAATAAAGAAAAATTCCCAGTGGTCCAAAAGAACCCTTCAATGTTACATTTTTGTGCCACAACAATTGTGAAAGATGCAGGTTGTGATGAAAGCATCATTCCTCACCATGTTTTTGAATTTGTTAATCTTGATGATTTACAAAGTCGGTGTGGAAAGGATGTGTTGACAGATGTGATTGGAGTTATCACAAAAGTTGGTCCAATTGAAGAGAAGAGGACTATTGGAGGCAGCGTTGATACCTTGACACTTCATTTACAAGACATAAGGGGAAATAGGGTTAAAGTGACAATATGGGATGAATATGTAAAGCTATTTGAGCAGAAATTGAAAGAAAATGTGTCTAAAGATCCTCAAGTCACTGTTGCAATTTTCACATCAACTATAATTAAAGAGTTTCGAGGTGAATTGTCTATATCCACATCAAGATCAACAAATATTTATGTCAACATAGACATACCAGAATCTAATGAGCTCATACAATCATTCAAGGATTCAAGTGATGAACCTATAGTTGGTAACTTTGAGGTGTCAAAGGATGGTGTCTGTCCTAAAACAGTGAAGACTATAGCTGAACTTCTGTCCATGGCAAGTTTAAAGAGTAATACGAATGATGTGTATTGCTGTGCTGCTACTGTAAACGATATCTTGCTGAAAAATGGTTGGAATTATGTTTGTTGCCCTCATTGCAAAAAAAAGGCTAATAGGACAACTACAAATTTCAGTTGTCAACATTGCCACAAAGTTGTTGAGTATCCAATGACAAGGTTGCGTTTGGAGCTTGATGTCAAAGATTCAACAGATTCTACCATATTTGTTCTATTTCATGAAGTTGCTGAACAATTAACACAATTGAACTTAGGAGACCATGCCACAACCTTTGAAAATGAAAATGGTGATGATTTGAACCTGCCACCCCAACTCCTAAAAATCATAGGTACTACCCATGTCTTCCAAATAAAAATGAGCACCTATTTTGAAAGCTATGGAAGGCGCAGTTTCACATCAAATAAAATTCTCAAGCCAGTTGTTAAGATTGAGGACGAAGATACGAAAGAAACCTCAGGTGCCAAATCAAAGGAAAATACATTGGAAAAAATTGGTTCTTCCTCAAATGGATCTTCAGATGCAAAAAAAATAAATTCACCACAAAAGAGGAGAAAGTTAAGGTAG 1320 0.3553 MIHLLLFNPIFFPFQSNYIHASIGRNIAHKFKPLLKEGKIYTIKNFEVTNNKEKFPVVQKNPSMLHFCATTIVKDAGCDESIIPHHVFEFVNLDDLQSRCGKDVLTDVIGVITKVGPIEEKRTIGGSVDTLTLHLQDIRGNRVKVTIWDEYVKLFEQKLKENVSKDPQVTVAIFTSTIIKEFRGELSISTSRSTNIYVNIDIPESNELIQSFKDSSDEPIVGNFEVSKDGVCPKTVKTIAELLSMASLKSNTNDVYCCAATVNDILLKNGWNYVCCPHCKKKANRTTTNFSCQHCHKVVEYPMTRLRLELDVKDSTDSTIFVLFHEVAEQLTQLNLGDHATTFENENGDDLNLPPQLLKIIGTTHVFQIKMSTYFESYGRRSFTSNKILKPVVKIEDEDTKETSGAKSKENTLEKIGSSSNGSSDAKKINSPQKRRKLR. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02033 439 Gene3D - 83 219 IPR012340 -
Seca5g02033 439 MobiDBLite consensus disorder prediction 410 428 - -
Seca5g02033 439 Gene3D - 15 75 IPR012340 -
Seca5g02033 439 SUPERFAMILY Nucleic acid-binding proteins 88 213 IPR012340 -
Seca5g02033 439 Gene3D - 224 403 IPR012340 -
Seca5g02033 439 MobiDBLite consensus disorder prediction 395 409 - -
Seca5g02033 439 CDD RPA1_DBD_C 239 399 IPR047192 -
Seca5g02033 439 PANTHER OS03G0429900 PROTEIN 130 417 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g02033 439 Pfam Replication protein A OB domain 100 199 IPR031657 -
Seca5g02033 439 Pfam Replication factor-A C terminal domain 258 379 IPR013955 -
Seca5g02033 439 SUPERFAMILY Nucleic acid-binding proteins 16 76 IPR012340 -
Seca5g02033 439 SUPERFAMILY Nucleic acid-binding proteins 236 373 IPR012340 -
Seca5g02033 439 CDD RPA1_DBD_B_like 107 213 - -
Seca5g02033 439 MobiDBLite consensus disorder prediction 395 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02033 Seca-Chr5 58398157 58400202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02033 79 371 Core DNA Replication Machinery Family AT5G45400 25.743 6.06e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02033 - - mtr:120580096 410.609