Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02030 ATGAGTTTTGTCTTTCGAGGAACAAGAGCAGATATAGAGAATGGATTTCCAGGATTTATACCCGAGAGGCGTGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTTGTAACAGTCCTCCTGTTATTCATGATACTGAACTCTCATCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACTATGTTAAGAATGTATGCTACATGCCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCACACAGAACTGCGTTTGCATATGCCTCCATCAATAGCACTCACAAGCCGAGGGCGTCTGCAGGGTCTTAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCCGGTCCCCAAAGCAGTAGTTCCTCAATGCAACAAGCATCGCCTTCCTCTTCTGCTGAGAAGACCCAAGATAATTCAAATGCAATTGGGAGCATGAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGACGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCTAATTGCATCGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTGGAATGACAGTGGACATAATGATATCGCGGACATGGTTTGA 822 0.4574 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALTSRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSSSSSMQQASPSSSAEKTQDNSNAIGSMKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGTGWNDSGHNDIADMV. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02030 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Seca5g02030 273 SUPERFAMILY RING/U-box 208 257 - -
Seca5g02030 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Seca5g02030 273 SMART ring_2 213 253 IPR001841 -
Seca5g02030 273 MobiDBLite consensus disorder prediction 172 203 - -
Seca5g02030 273 CDD RING-H2_PA-TM-RING 212 254 - -
Seca5g02030 273 Pfam Ring finger domain 212 254 IPR001841 -
Seca5g02030 273 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Seca5g02030 273 MobiDBLite consensus disorder prediction 164 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02030 Seca-Chr5 58356943 58361254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02030 1 273 C3H Transcription Factor Family AT3G55530 77.899 1.24e-146 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02030 K16283 - gmx:100777936 467.618