Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02022 ATGTCTGCCGTTGCCACACCCAATGATCCATTTGCAATGCAAATCGTGTTCGTGGATGAGGAGGGCGGTCGGATTGAAGCAACTGTTGGGAAGCAGTTCATAAGGAAATTTGATAGCTGTGTGGTTGAGGGAGAGGTCTATAAGGTGACTGATTTTGCAATCATCAAGAACCTTGGAAAGTTTAGAGCAACGAGCCATGGTTTCAAGCTGGTTTTCAATGCCACCACCAAATTGTTACCCACACTGGTTGGAAGTATCCCATTTCATGGGCTCTCATTCCTCAAGACCTCCGATATCATGAAAACAAAGGGCCATTCAGACTACCTATTGGATTATATGGGGATCTTGACAGCAGTATCTGATGAGATGACAATGACCTCAAGAGATGGAAGAGGGACTAGGTTGATGCAGTTGGAACTGGTTGATGAAACGGGGGAGATAAGGTGTGCAATCTTTGGAGATTTGATTGATGTTGTTGCTGGCTTACTTGCTCTGCCTCGGGTAGGTCTACCTGTGGTTATCCTTCAGGTTGTGAGGGTAAACAAGTATAAAGGAGAGGTAGGGATACAAAATGTGATGAATGCTACGAAGATACTGTGGGAGCCTGACATCCCAGAAGCAATTCAGTTTAAACAAGAGCTGGCTGTGCATGAGGTGGAGTCTGATCTGAAGGTTGGAATGCTGCCCAAGAGTAAAACAATTGTCCCTCTGCGGGATGATTTTTTCAAGCTTTACCCAAGGAAGACCTTGTGCCAATTAGTTGAAACTGAGGAGGAGGGTTATTTCACAACCGTGGCAACTATTTCTAAGATTTGTGATGATTATCCTTGGTGGTACATGGCCTGCAGTTGTATGAGAGCTGTGACACAAATTGGAGTAGCATATTTCTGCAAAGATTGTAACTTGCATATGTTTAATGCTATGCCCAGGTATAAGCTGAAATTGGATGTCAGCGATGGAGATGACTTAGTGAGGCTGGTGCTTTTTGATGGTGAAGCAGTTGATCTTCTGAATAGGTCTTGCGAGGAGCTGGTGATACAGTCAAAGGTTGAGTCGGACTGTGACTTTCCTGAAGAAATCTCCATGTTGGTTGGGAAGGAGGTTTTATTCAAGGTGGAGAAGACAGCTGAAGCTTCTTCCAACTTTGATGGCTCTCTAAAAGTTAAGAGGGTTTGCTCAGACCCTCTATTGATTGATGAGTACAAGCAAAGGCTATGTGAGGATACACCATTAAAGCAAAAGTTTGCACCATTTTTCCCAAAACTTGGCAATGGTGAGGAGAGTAGTGGCACGAAGGAGATCAAAGTTGAGAGTTGTTCGGTCATTACAGAGATTGATGTGACCCCTTTGTCTTATGGTCAACCCTCCAACACACCTGATGCAGAATCTATTATCTCAAAGAGGGAAGCCACTCAATCTCTTGAACCTGCACCCGAACGCAAAAGGAGGGCCAAGGTGAAGCCTGTAAAGTTTGAGTAA 1479 0.4435 MSAVATPNDPFAMQIVFVDEEGGRIEATVGKQFIRKFDSCVVEGEVYKVTDFAIIKNLGKFRATSHGFKLVFNATTKLLPTLVGSIPFHGLSFLKTSDIMKTKGHSDYLLDYMGILTAVSDEMTMTSRDGRGTRLMQLELVDETGEIRCAIFGDLIDVVAGLLALPRVGLPVVILQVVRVNKYKGEVGIQNVMNATKILWEPDIPEAIQFKQELAVHEVESDLKVGMLPKSKTIVPLRDDFFKLYPRKTLCQLVETEEEGYFTTVATISKICDDYPWWYMACSCMRAVTQIGVAYFCKDCNLHMFNAMPRYKLKLDVSDGDDLVRLVLFDGEAVDLLNRSCEELVIQSKVESDCDFPEEISMLVGKEVLFKVEKTAEASSNFDGSLKVKRVCSDPLLIDEYKQRLCEDTPLKQKFAPFFPKLGNGEESSGTKEIKVESCSVITEIDVTPLSYGQPSNTPDAESIISKREATQSLEPAPERKRRAKVKPVKFE. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02022 492 Pfam Domain of unknown function DUF223 15 80 IPR003871 -
Seca5g02022 492 Pfam Replication factor-A C terminal domain 261 380 IPR013955 -
Seca5g02022 492 Gene3D - 85 222 IPR012340 -
Seca5g02022 492 PANTHER OS03G0429900 PROTEIN 173 388 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g02022 492 MobiDBLite consensus disorder prediction 450 492 - -
Seca5g02022 492 SUPERFAMILY Nucleic acid-binding proteins 91 215 IPR012340 -
Seca5g02022 492 MobiDBLite consensus disorder prediction 450 470 - -
Seca5g02022 492 SUPERFAMILY Nucleic acid-binding proteins 13 79 IPR012340 -
Seca5g02022 492 SUPERFAMILY Nucleic acid-binding proteins 245 377 IPR012340 -
Seca5g02022 492 Gene3D - 5 80 IPR012340 -
Seca5g02022 492 MobiDBLite consensus disorder prediction 473 492 - -
Seca5g02022 492 CDD RPA1_DBD_A_like 6 77 - -
Seca5g02022 492 CDD RPA1_DBD_C 252 408 IPR047192 -
Seca5g02022 492 Gene3D - 242 409 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02022 Seca-Chr5 58138918 58145382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02022 17 329 Core DNA Replication Machinery Family AT2G06510 23.009 3.32e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02022 - - lja:Lj6g3v0884310.1 327.02