Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01987 ATGTTAATGGGTTGCTGCTTTAGTGCAAAGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAATTCAAAGGATGAAAGCAAAGAAGAGGATGGTTTGAGTGGTTTAAGCAGCAGGGTCTCCTCTTCATCTGTGCTTCTAACTTACAGGACAGAAGGTGAGATATTGCAGGCTAGCAATTTGAAGTGCTTCTCATTCAATGAGATACGAACTGCCACAAGGAACTTTCGACCAGATAGTTTGGTGGGTGAAGGTGGGTTTGGTTGTGTGTTTAAAGGGTGGATTGATGAGCACACACTTACCCCAACTAAACCAGGAACTGGATTTGTCATAGCTGTGAAGAGGCTTAACCAAGAGGGCACCCAGGGACACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGAGTCATCCTAATCTTGTGAAACTGGTTGGTTACTGCTTAGAGGATGACCACCGGATTTTGGTATATGAGTTTTTGGCCAAGGGCAGTTTGGATAATCATTTGTTTAGAAATGTTTCTGGAGCAGGGGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGTATGAAGATTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGAAGTAATATATAGAGATTTCAAAACATCTAATATCTTGCTTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAGATGGACCAGAAGGTGATAAGAGCCATGTTTCTACAAGAGTAATGGGCACCTTAGGTTATGCAGCTCCTGAGTATATAGCCACAGGTCACTTAACAAAAAAGAGTGATATATACAGTTTTGGGGTTGTTCTCTTGGAACTTATGTCAGGAAAACGTGCATTGGACAAAAACAGGCCATCTGGGGAGCATCATTTAGTTGAATGGGCAAAGCCATTACTCATCAGCAAACGCAAGATCTCCCAAGTTATGGATGCCCGCATTGAAGGCCAATACTCATTGCGTGAAGCAATGAAAGTAGCTCACATTGCAATTCAATGCCTATCTATAGATACCAAATTTAGACCAAACATAGATGAGGTGGTGAGATCATTGGAGCAACTTCAAAATTTTAATGGAACAAGTGTCAATGAATCTTTAAATGAAGAAGCTACTTCTATTCCAAGTTCATCTGCTGCTTCTCCTCTACATAAGTAG 1191 0.4148 MLMGCCFSAKIKAESPPRNGLNSKDESKEEDGLSGLSSRVSSSSVLLTYRTEGEILQASNLKCFSFNEIRTATRNFRPDSLVGEGGFGCVFKGWIDEHTLTPTKPGTGFVIAVKRLNQEGTQGHIEWLTEINYLGQLSHPNLVKLVGYCLEDDHRILVYEFLAKGSLDNHLFRNVSGAGASYFQPLSWKIRMKIALDAAKGLAFLHSDEVEVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPEGDKSHVSTRVMGTLGYAAPEYIATGHLTKKSDIYSFGVVLLELMSGKRALDKNRPSGEHHLVEWAKPLLISKRKISQVMDARIEGQYSLREAMKVAHIAIQCLSIDTKFRPNIDEVVRSLEQLQNFNGTSVNESLNEEATSIPSSSAASPLHK. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01987 396 ProSiteProfiles Protein kinase domain profile. 76 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01987 396 Gene3D Transferase(Phosphotransferase) domain 1 162 389 - -
Seca5g01987 396 FunFam Serine/threonine-protein kinase PBS1 162 381 - -
Seca5g01987 396 MobiDBLite consensus disorder prediction 19 33 - -
Seca5g01987 396 MobiDBLite consensus disorder prediction 377 396 - -
Seca5g01987 396 MobiDBLite consensus disorder prediction 14 37 - -
Seca5g01987 396 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Seca5g01987 396 CDD STKc_IRAK 82 366 - -
Seca5g01987 396 FunFam Serine/threonine-protein kinase BIK1 42 161 - -
Seca5g01987 396 PANTHER OS01G0588500 PROTEIN-RELATED 36 367 - -
Seca5g01987 396 SUPERFAMILY Protein kinase-like (PK-like) 56 365 IPR011009 -
Seca5g01987 396 Pfam Protein tyrosine and serine/threonine kinase 81 363 IPR001245 GO:0004672|GO:0006468
Seca5g01987 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Seca5g01987 396 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01987 Seca-Chr5 57522921 57527042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01987 62 379 Glycoside Hydrolase AT3G07070 46.395 4.06e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca5g01987 PK_Tyr_Ser-Thr 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01987 - - var:108326804 611.298