Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01982 ATGAGAAAACCTTGTTGTGACAAAGAAGGTACTAACAAAGGTGCATGGTCCAAGCAAGAAGACCAAAAGCTTATTGATTACATCCAAGCTCATGGTGAAGGCTGTTGGCGTTCCCTTCCAAAGGCTGCAGGGTTGCATCGTTGTGGCAAAAGCTGTCGGTTGAGATGGATAAACTATTTACGACCAGACATTAAACGTGGCAACTTTGCTCAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTTCTTGGAAACAGGTGGTCACTTATAGCTGGAAGGTTGCCAGGACGCACAGACAACGAGGTGAAGAACTATTGGAATTCTCACATCCGGAGAAAATTAATAAAGATGGGAATTGATCCAAATAACCATAAGCTACACCAAAGCTTCCCAATTCCACAATCTCACAATGTTTCTTCAACCATGAACAAAGAGCATGGAGCACCTTGCATAAAATCCTATGGTTCTGATGATGATAAGATTTCGGACAACATACAAAGTTATAATATTGTAGAGGAAGCAGCAATGGTTTCTTCGTCACCTCACTTGAATCTTGACCTCACCATTGCTGTCCCTTCACCTAGACTTCTTCATCCTGTGGAAGATGAATCTAAATCTATTTCTGAGTTCAATAAAACAAGGAAAAACATCGATGAGGATTCCCCTCCTACTCTTCCTCTCTTTCGATAA 693 0.4156 MRKPCCDKEGTNKGAWSKQEDQKLIDYIQAHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQSFPIPQSHNVSSTMNKEHGAPCIKSYGSDDDKISDNIQSYNIVEEAAMVSSSPHLNLDLTIAVPSPRLLHPVEDESKSISEFNKTRKNIDEDSPPTLPLFR. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01982 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca5g01982 230 SMART sant 12 62 IPR001005 -
Seca5g01982 230 SMART sant 65 113 IPR001005 -
Seca5g01982 230 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca5g01982 230 Gene3D - 68 145 - -
Seca5g01982 230 CDD SANT 68 111 IPR001005 -
Seca5g01982 230 FunFam MYB-related transcription factor 12 65 - -
Seca5g01982 230 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Seca5g01982 230 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca5g01982 230 MobiDBLite consensus disorder prediction 201 220 - -
Seca5g01982 230 CDD SANT 15 60 IPR001005 -
Seca5g01982 230 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Seca5g01982 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca5g01982 230 FunFam Transcription repressor MYB4 68 134 - -
Seca5g01982 230 Gene3D - 13 65 - -
Seca5g01982 230 MobiDBLite consensus disorder prediction 201 230 - -
Seca5g01982 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 159 - -
Seca5g01982 230 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01982 Seca-Chr5 57464641 57467208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01982 2 193 MYB Transcription Factor Family AT4G38620 57.282 5.26e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g01982 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01982 K09422 - mof:131159642 309.686