Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01970 ATGGAGAGTCCTCATTCTCCTTCTTCTTGTTCATCTTCGTCGTCTAATTGTTCATGGGAGGGTCACGGCGCCGACACCGTCAATTTGGAATCGGAGGAGCCTCGAACGCCGTTGGCCGTCCGGAGAGCTCTCCAACTCCTCAACTCCGGCGAGCCGGAGCTGCGGCTCCAAGCCGCTCGCGACATCCGGCGACTCACGAAGACCTCACACCGCTGTCGGCGCCAGCTCTCCGAAGCTGTGGGCCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTCCTCGCCTTGCTTAACCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCGATAATTACTTTCCTCAAGTCACAAAATCAAAATCTGCAAGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGCGCCATTCCTCTTCTTGTGGAGATCCTTAGAGATGGAAGCCCGCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAACTTATCAACACACCCTAATAATCTCAGCATCATTCTCGAAACAAATCCAATCCCTTTTATAGTTGATCTTCTTAAAGCCTGTAAAAAATCCTCAAAAACAGCTGAAAAATGCTCTGCTTTGATAGAATCCTTAGTGGATTATGATGAGGGCAGAACTGCCTTGACATCTGAAGAAGGTGGAATTCTAGCAGTTGTGGAAGTTCTTGAAAATGGCACACTCCAGAGTAGGGAGCATGCTGTTGGAGCACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTCATTCCAGGACTTCTCGAACTTACTGTTCAAGGAACAACCAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGAGAGAGTCTCCTTATCCAAGATCTGAACTTCAACCTGACACTCTTGAGAACATAGTGTGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTGAGACATTTACAGCAAAGGGCTCTCGTATTCACCCCAAGTGATCTGCCAATAGCTGGCTGTGCTTCTGAAGTTCCTTCAAAATGA 1185 0.4726 MESPHSPSSCSSSSSNCSWEGHGADTVNLESEEPRTPLAVRRALQLLNSGEPELRLQAARDIRRLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIITFLKSQNQNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTHPNNLSIILETNPIPFIVDLLKACKKSSKTAEKCSALIESLVDYDEGRTALTSEEGGILAVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTTKSQSKARTLLQLLRESPYPRSELQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPSDLPIAGCASEVPSK. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01970 394 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g01970 394 Gene3D - 24 375 IPR011989 -
Seca5g01970 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Seca5g01970 394 FunFam U-box domain-containing protein 4 23 376 - -
Seca5g01970 394 SUPERFAMILY ARM repeat 40 344 IPR016024 -
Seca5g01970 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Seca5g01970 394 SMART arm_5 235 275 IPR000225 GO:0005515
Seca5g01970 394 SMART arm_5 109 149 IPR000225 GO:0005515
Seca5g01970 394 SMART arm_5 150 190 IPR000225 GO:0005515
Seca5g01970 394 SMART arm_5 191 233 IPR000225 GO:0005515
Seca5g01970 394 SMART arm_5 66 107 IPR000225 GO:0005515
Seca5g01970 394 Pfam Armadillo/beta-catenin-like repeat 110 147 IPR000225 GO:0005515
Seca5g01970 394 Pfam Armadillo/beta-catenin-like repeat 153 189 IPR000225 GO:0005515
Seca5g01970 394 PANTHER U BOX DOMAIN-CONTAINING 31 322 - -
Seca5g01970 394 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01970 Seca-Chr5 57261837 57266064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01970 23 317 U-box Gene Family AT2G23140 33.444 8.95e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01970 - - gmx:100809684 652.899