Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01966 ATGGGCAGTAAAATTTTGTTTACGTGGCCAAAGCAAATTACAAATTCCCTAGTTGAGAAGCTAATACAAGCAGAAAAGGACATACACAAAGCTGTCCATATCTTTGATTTAGCAACAGCCGAATATAGTAATGGGTTTCGTCATGATCACAAAACTTTTGGTCTCATGATCTCTAAGTTAGTCGCTGTGAACCAGTTTAGATCAGCAGAAGGAATGCTGGAGAGAATGAAACAAGAAAATTGCAAGGTTACAGAAGACATATTTTTAGCTATATGCAGGGGTTATGGACGTGTGCATAGGCCACTTGATGCCATCAGGGTTTTCCACAAGATGGAATTCTTCCAGCTAAAACCCACTCAAAAATCTTACCTCACAATATTTGATATCCTTGTGGAGGAAAACCATGTAAAAAGGGCTATTAGTTTTTACAGGGAGATGAGAGAAATGGGCATTCCACCTAATGTTGTTTCCCTCAATATTTTGATCAAGGCCCTCTGCAAAAACAAGGAAACTATTGATGCTGCTTTACGGATATTTCATGAGATGCCCAACCGTGGATGCCAGCCTGATTCATATACATATGGTACATTGATTAATGGGTTGTGCAGACTTGGACAAATCAGTCAGGCAAAGGAACTGTTCGAAGAGATGGTGGAGAAAGGTTTTTTACCTTCTGTTGTTACCTATACTAGTTTGATACATGGCATGTGTCAGTCTAATAATATGGATGAAGCTATAAGATTGCTTGAAGAGATGAAAAGAAATGGCATTGAGCCAAATGTTTTTACTTATAGTTCTTTAATGGATGGTTTATGTAAAAGTGGCCATTCATCACAAGCAATGGAGTTGTTAGAAATGATGGTTACGAAACATCATTTGCCTAACATGGTCACTTATAATACTTTAATCAATGGATTGTGTAAAGAAGGAAATCTTAGTGAAGCTGTGGAGATTCTTGACAGGATGAGGCTTCAAGGCTTGAAACCAAATGCAGGGCTGTATGGGAAAATCATAAGTGGCCTCTGTGCTGCACATAGCTATCAAGAAGCTGCAAACTTTATTGATGAGATGGTGCTTGGCGGTATCTCACCAAATCGGGCAACTTGGAGCCTTCATGTTAAAATGCAAAACATGGTGGTCCATGGTCTTTGTAATAATATTGATCCATCCCGTGCATTTCAGTTGTATCTTAGCATGCGTACTAGGGGTATCTCTATTGAAATCGGCACTTTTGATTGTTTAATCAAATGTTTTTGCAAGAGAGGAGACCTGCACAAAGCTGCTCGGATTCTTGAAGAGATGGTACTAGATGGCTGCATTCCAGATGAGGGTGTATGGAATGTAGTAATGGATGGACTCTGGGATCGGAAAAAAGGAGAGAACATGAAAGCTGCCAAGAAGCAATGCTCAAATGAGAGTAAAGCGCCAAAACCAAGGTCAAGTACATCTAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAGGAATTGGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGCTGGCAACTGATGAATTTTGGCCTGTGCAAGATGGAAAATCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAAAGAGACAGAAGTTCAAGCTCAAAGTAG 1731 0.3986 MGSKILFTWPKQITNSLVEKLIQAEKDIHKAVHIFDLATAEYSNGFRHDHKTFGLMISKLVAVNQFRSAEGMLERMKQENCKVTEDIFLAICRGYGRVHRPLDAIRVFHKMEFFQLKPTQKSYLTIFDILVEENHVKRAISFYREMREMGIPPNVVSLNILIKALCKNKETIDAALRIFHEMPNRGCQPDSYTYGTLINGLCRLGQISQAKELFEEMVEKGFLPSVVTYTSLIHGMCQSNNMDEAIRLLEEMKRNGIEPNVFTYSSLMDGLCKSGHSSQAMELLEMMVTKHHLPNMVTYNTLINGLCKEGNLSEAVEILDRMRLQGLKPNAGLYGKIISGLCAAHSYQEAANFIDEMVLGGISPNRATWSLHVKMQNMVVHGLCNNIDPSRAFQLYLSMRTRGISIEIGTFDCLIKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVMDGLWDRKKGENMKAAKKQCSNESKAPKPRSSTSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQDGKSPDISQVKEAIDAILSSQRDRSSSSK. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Seca5g01966 576 MobiDBLite consensus disorder prediction 464 493 - -
Seca5g01966 576 Pfam Helix-loop-helix DNA-binding domain 492 532 IPR011598 GO:0046983
Seca5g01966 576 NCBIfam pentatricopeptide repeat 334 365 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 262 295 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 376 405 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 122 155 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 297 331 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 156 191 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 227 261 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Seca5g01966 576 NCBIfam pentatricopeptide repeat 192 225 IPR002885 -
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Seca5g01966 576 CDD bHLH_AtIND_like 483 545 - -
Seca5g01966 576 FunFam Pentatricopeptide repeat-containing protein At5g39710 173 279 - -
Seca5g01966 576 Gene3D Tetratricopeptide repeat domain 14 170 IPR011990 GO:0005515
Seca5g01966 576 Pfam PPR repeat 52 81 IPR002885 -
Seca5g01966 576 Pfam PPR repeat 122 151 IPR002885 -
Seca5g01966 576 FunFam Transcription factor bHLH83 480 539 - -
Seca5g01966 576 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 25 182 - -
Seca5g01966 576 Gene3D Tetratricopeptide repeat domain 374 477 IPR011990 GO:0005515
Seca5g01966 576 Gene3D Tetratricopeptide repeat domain 171 275 IPR011990 GO:0005515
Seca5g01966 576 Gene3D Tetratricopeptide repeat domain 276 373 IPR011990 GO:0005515
Seca5g01966 576 Pfam PPR repeat 291 323 IPR002885 -
Seca5g01966 576 Pfam PPR repeat 403 435 IPR002885 -
Seca5g01966 576 SUPERFAMILY HCP-like 87 259 - -
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 49 83 IPR002885 -
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 189 IPR002885 -
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Seca5g01966 576 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 541 IPR036638 GO:0046983
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Seca5g01966 576 SMART finulus 488 537 IPR011598 GO:0046983
Seca5g01966 576 Gene3D - 478 539 IPR036638 GO:0046983
Seca5g01966 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Seca5g01966 576 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Seca5g01966 576 MobiDBLite consensus disorder prediction 474 488 - -
Seca5g01966 576 Pfam PPR repeat family 224 273 IPR002885 -
Seca5g01966 576 Pfam PPR repeat family 153 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01966 Seca-Chr5 57150329 57153511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01966 32 574 Glycosyltransferase AT1G05670 26.866 3.78e-58 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g01966 PPR_2 1.2e-18 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01966 - - gmx:100794116 813.527