Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01965 ATGGCACTGGCCAAAGACCAAATTCCACATGATTCAAGCATGGGAAACAAGGTTCAAACTTGTGTTTTCAATCACAAATCTGTGCTTGAACAGGAACATGGCACTCAGAGTACTAATGAACTCAGCAATGATTCAGGTACAAGTATAAACCATTCTCCTCCTCTATGTGGTAGTGACAATGGTTATGTTTATAAGGGAAGAAACTATCAGCTTGAAGAAGCAGAACCTCTTATTAATTTCAAAGAAAGTAGTGGATACAGCAATATCATGCAAGCTAGTGAATCTTCGCTTAGCTTTCAGCAGAGCAGGTTGGTCCCTAACAACTGTTACTTGAAAGATAGCAGCAGTCAGAAAGAGTACTGTGTTTATGAGAATAATATGCATCAAGGCTATCAAACTGCTAGTGGCTATAGCTCCATAGTCAGTAGTGCAAAAGAGAAGCAACATGGCCAGAGTTCATATGGGTGGCTCTATTCAGAGCCAACTATGCATGTTGATAGCCTCCAGAACCAGAAGTCAAGAACAGAAGAATCAGTCTTGAAAAAACGCCCTGCTATGGGAGAGAACATGAAAGCTACCAAGAAGCAATGCTCAAATGAGAGTAAAGCGCCAAAACCAAGGTCAAGTACATCTAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAGGAATTGGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGAAGCCATTTTTTCATCCCAAAGAGACAGAAGTTCAAGCTCAAAGTAG 915 0.4098 MALAKDQIPHDSSMGNKVQTCVFNHKSVLEQEHGTQSTNELSNDSGTSINHSPPLCGSDNGYVYKGRNYQLEEAEPLINFKESSGYSNIMQASESSLSFQQSRLVPNNCYLKDSSSQKEYCVYENNMHQGYQTASGYSSIVSSAKEKQHGQSSYGWLYSEPTMHVDSLQNQKSRTEESVLKKRPAMGENMKATKKQCSNESKAPKPRSSTSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEAIEAIFSSQRDRSSSSK. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01965 304 MobiDBLite consensus disorder prediction 166 223 - -
Seca5g01965 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 269 IPR036638 GO:0046983
Seca5g01965 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Seca5g01965 304 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 34 268 IPR045843 GO:0003700|GO:0006355
Seca5g01965 304 MobiDBLite consensus disorder prediction 32 54 - -
Seca5g01965 304 CDD bHLH_AtIND_like 211 273 - -
Seca5g01965 304 Gene3D - 205 267 IPR036638 GO:0046983
Seca5g01965 304 FunFam Transcription factor bHLH83 208 267 - -
Seca5g01965 304 MobiDBLite consensus disorder prediction 175 189 - -
Seca5g01965 304 MobiDBLite consensus disorder prediction 192 216 - -
Seca5g01965 304 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Seca5g01965 304 SMART finulus 216 265 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01965 Seca-Chr5 57138770 57140682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01965 125 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 58.564 4.73e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g01965 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01965 - - gmx:100810010 407.142