Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01953 ATGGGTTTCTCCCAAGGAACTTGCACTGATTCCAGGGACCTTTCCAATGCCCAAAGCGCTCTTCCTCCATATGCTTCCACTTACAGTGACTACAACAAACTCAAATTTCGAACCTTTTTGAGAAAAATGATCTGGGAATTTGGTTTTGCGTGTGTTGGCAACCCTTCCTGTAACCGGGGGAACTCCGAGAGAAACCTGGGTCATAGCGAAAACGACGGCAAAAAGATGAGTTTAGAAAACAACAAGGCTTGGTTGCTTGCGGAGTCTGGTGGGTGTGGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCTTCTTTTAGGTTCAGCTTCTGTTCTCAGGTGGAGTTGGAGTCCTTGAACATGAGTTCTTCCTCTGCTGCTACCGTTTTGATGGTGAATTTGGACAATGGGGTGAGTGAATCTCGTGCTAAGGAACTCAAATGGAGGAGAATGGAGTCATTGGAGAAGAGCATTTCCCCTGTTGCTCACTCTTTGATAAGGTTCAGCTATGGTGAAATTTTATCTGCCACTCGGAATTTCTCCAAAGGTAGGGTGTTGGGGAGAGGGGCATTGAGCTGTGTTTTTAGGGGAAGAGTAGGGCTTTTTAGAAATGCTGTAGCAATTAAACAGTTGGACAAGGAAGACAAGGAGTCTGCCAAGGCCTTTTGTAGAGAATTGATGATTGCTAGCTCTCTTCATAGCCCAAACGTTGTTCCCCTTGTGGGTTTTTGTATTGACCCGGAGGAGGGTTTGTTTTTGGTTTACAAGTATGTCTCAGGGGGCAGCTTGGAGCGCCACTTGCATGGTACACGGAGGAAGAAGGGTGTGAAGGGTAGTTCACCACTTCCATGGTCAGTGAGGTACAAAGTTGCAGTTGGGATTGCAGAAGCTGTGGCTTATCTGCATAATGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAGCCCTCAAACATTCTGCTTTCTTCTAAGAAGACTCCCAAGCTATGTGATTTCGGATTGGCTACATGGACTTCTGCACCTTCTGTTCCATTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAATATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTAGAACTCATTACTGGCCGGAAGCCAATTGAAGCAAGAAGGTCTCCGGGAGAGGAGAACTTGGTCTTATGGGCTAAACCTTTTCTACAGAAGGGGAAAGGAGCCATAGAAGAGTTGCTTGATCCTCAACTCAAGTGCAGTTTGAAATTCTCAAATCAAATGGGTAGAATGATTGAAGCAGCAGCTGCCTGTGTCACAAATGAAGAATCTAGGAGACCTGGCATACATGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTATTTTCTCTAAAAGAAAGAAGTCCAGTTTTCTTGGGAATGGCTGCGTGATTGATTGTTATTCTCAATTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGATCGTTAA 1575 0.4368 MGFSQGTCTDSRDLSNAQSALPPYASTYSDYNKLKFRTFLRKMIWEFGFACVGNPSCNRGNSERNLGHSENDGKKMSLENNKAWLLAESGGCGGAELTNADPQSVHSSFRFSFCSQVELESLNMSSSSAATVLMVNLDNGVSESRAKELKWRRMESLEKSISPVAHSLIRFSYGEILSATRNFSKGRVLGRGALSCVFRGRVGLFRNAVAIKQLDKEDKESAKAFCRELMIASSLHSPNVVPLVGFCIDPEEGLFLVYKYVSGGSLERHLHGTRRKKGVKGSSPLPWSVRYKVAVGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRSPGEENLVLWAKPFLQKGKGAIEELLDPQLKCSLKFSNQMGRMIEAAAACVTNEESRRPGIHEIIAILKGEEEPIFSKRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVSEFEDDDYLYDR. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01953 524 ProSiteProfiles Protein kinase domain profile. 183 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01953 524 SMART serkin_6 183 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01953 524 FunFam Putative receptor-like serine/threonine-protein kinase 261 481 - -
Seca5g01953 524 SUPERFAMILY Protein kinase-like (PK-like) 170 470 IPR011009 -
Seca5g01953 524 FunFam probable serine/threonine-protein kinase PBL7 144 260 - -
Seca5g01953 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Seca5g01953 524 Gene3D Phosphorylase Kinase; domain 1 167 260 - -
Seca5g01953 524 Pfam Protein kinase domain 184 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01953 524 Gene3D Transferase(Phosphotransferase) domain 1 261 481 - -
Seca5g01953 524 PANTHER OS08G0249100 PROTEIN 125 480 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01953 Seca-Chr5 56143011 56146365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01953 171 468 Trihelix Transcription Factor Family AT1G70460 42.333 2.19e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca5g01953 Pkinase 6.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01953 - - gmx:100786826 909.442