Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01946 ATGGAGAACTTGTTGGGGCTGCTCAGAATTCATGTTGAAAGAGGGGTCAATCTTGCTATTAGGGATGTAGTGAGCAGCGACCCTTATGTTGTCATCAAAATGGGAAAGCAGACTCATGACTGCATTTTATGTCTAATGCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTAAATCCTGAATGGAATGATGACTTGACTTTATCCATTTCAGATCCTCATGCTCCAATCCAGCTATTTGTGTATGACAAGGACACATTTAGCTTGGATGATAAAATGGGGGATGCTGAGTTTGTGATTGTTCCATTTGTTGAAGCAGTAAAGATGCGCTTGGAAGGTCTCCCTAATGGTACTATAGTTACAAAAGTGCAACCTAGCCGACAAAACTGCTTAGCAGAAGAGAGTAAGATTGTCTGGAAGGATGGCAAAGTGATCCAAAACATGGTTCTTAGGCTCAGAAATGTTGAGAGTGGGGAAGTGGAGCTCCAGTTGTGTTGGATTGACATTCCTTGTTCAAGGGGTATTTAG 528 0.4223 MENLLGLLRIHVERGVNLAIRDVVSSDPYVVIKMGKQTHDCILCLMQKLKTRVVKKNLNPEWNDDLTLSISDPHAPIQLFVYDKDTFSLDDKMGDAEFVIVPFVEAVKMRLEGLPNGTIVTKVQPSRQNCLAEESKIVWKDGKVIQNMVLRLRNVESGEVELQLCWIDIPCSRGI. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01946 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 171 IPR044562 -
Seca5g01946 175 Pfam C2 domain 6 98 IPR000008 -
Seca5g01946 175 SMART C2_3c 7 112 IPR000008 -
Seca5g01946 175 Gene3D C2 domain 4 172 IPR035892 -
Seca5g01946 175 CDD C2_ArfGAP 5 158 - -
Seca5g01946 175 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Seca5g01946 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 101 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01946 Seca-Chr5 56071144 56073278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01946 48 175 C2H2 Transcription Factor Family AT1G70790 57.692 1.20e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01946 - - pvu:PHAVU_001G230800g 286.189