Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01942 ATGAAGAGGGATCACCAAGATAGTTGTGGTGGTGGTGGTGGTGGTTCTAGCTACGGGAGTGGGAAGAGCAGCGTCGGTGGCGTGAAAGGTGAATGCTCGTCAATGCCGAACGGCAAGGCGAAGATGTGGGAGGAAGAACACGACTCCGGTGCCACCGCCGGCGGAGGAATGGATGAGCTCCTTGCGGCGTTGGGGTACAAGGTGCGTTCCTCCGACATGGCTGACGTGGCGCAGAAGCTTGAGCAGCTTGAGATGGTGATGGGAAGTGCTCAAGAAGATGGAATTTCACACCTTGCTTCTGATACGGTTCACTACGACCCAACGGATCTCTATTCATGGGTTCAAAACATGATCACCGAACTCAACCCTGCTCCACTCGATCCATCTTCCCTCTTGGAAAACCCCCAAATCAACGACTCCAACAACACTTCAAGGGTCTTCAACGACGACTCAGAATACGACCTCAGAGCAATCCCTGGCATAGCCGCATACCCACAACAACAGCAAAACCAAACCAACAACAACAACGAAGAAATCGAACCCGGTAACAAGCGATTGAAGACATGGGGAATGGAATCACCAGATTCAGTGGCTCCTGAGCCAACTAGGCCGGTTGTTCTGGTTGACTCACAGGAAACAGGGGTTCGTCTTGTGCACACTATGATGGCTTGTGCTGAAGCGATTCAGCAAGAGAATCTGAAGCTCGCGGACACGCTGGTGAAGCATATAGGGTTGCTCGCGGCGTCGCAAGCCGGAGCGATGAGGAAGGTTGCTTCTTACTTCGCACAAGCCTTAGCTCGGAAAATCTACGGAATCTACCCTGAAGAAGCCATGGATTCATCTTTCTCCGATGTGCTTCACATGCACTTCTACGAATCCTGTCCTTACCTGAAATTCGCGCACTTCACCGCCAACCAGGCTATTCTAGAAGCTTTTGCCTCCGCCGGCAGGGTCCACGTCATCGATTTTGGCCTGAAACAGGGGATGCAGTGGCCGGCGCTCATGCAAGCCCTCGCATTGCGCCCCGGTGGCCCCCCAACTTTCCGGCTAACCGGAATCGGACCGCCGCAGAATGACAACACCGATGCACTCCAACAGGTTGGTTGGAAGCTCGCTCAGCTTGCTCAAACCATTGGTGTTCAGTTTGAATTTCGTGGATTTGTCTGTAACAGCCTCGCGGATCTTGACCCGAACATGCTCGAGATCCGACCCGGTGAAGCAGTTGCAGTTAACTCCGTCTTTGAACTCCACCGCATGCTAGCCCGACCCGGATCCGTTGACAAGGTTCTCAACACCGTGAAAAAGCTTAAACCCAAGATCGTTACTATCGTTGAGCAAGAAGCGAACCATAACGGACCGGTTTTCGTAGACCGGTTCACGGAGGCACTGCATTATTACTCGAGTTTATTTGACTCGCTGGAAGGCGCGTCCTCGAACGGGTCCGTTTCACCGAGTCAGGACCTGCTTATGTCTGAGTTGTACCTGGGGATACAGATTTGCAACGTGGTGGCGTGTGAAGGTGTGGACCGGGTCGAGAGGCATGAGACGCTGAGTCAGTGGAGGGGGAGAATGGGTTCGGCCGGGTTTGACCCGGTTCATCTTGGGTCTAACGCGTTCAAGCAAGCGAGTATGTTGTTGGCTCTTTTCGCCGGCGGTGATGGGTATAGGGTTGAGGAGAATAATGGGTGTCTCATGCTTGGGTGGCACACGAGGCCACTCATCGCCACCTCGGCGTGGAAGCTTCCACCCGGTGAGTCGTAG 1761 0.5383 MKRDHQDSCGGGGGGSSYGSGKSSVGGVKGECSSMPNGKAKMWEEEHDSGATAGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEDGISHLASDTVHYDPTDLYSWVQNMITELNPAPLDPSSLLENPQINDSNNTSRVFNDDSEYDLRAIPGIAAYPQQQQNQTNNNNEEIEPGNKRLKTWGMESPDSVAPEPTRPVVLVDSQETGVRLVHTMMACAEAIQQENLKLADTLVKHIGLLAASQAGAMRKVASYFAQALARKIYGIYPEEAMDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFASAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQNDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDKVLNTVKKLKPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGASSNGSVSPSQDLLMSELYLGIQICNVVACEGVDRVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPPGES. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01942 586 Coils Coil 73 93 - -
Seca5g01942 586 Pfam Transcriptional regulator DELLA protein N terminal 58 125 IPR021914 -
Seca5g01942 586 MobiDBLite consensus disorder prediction 1 38 - -
Seca5g01942 586 Pfam GRAS domain family 217 580 IPR005202 -
Seca5g01942 586 Gene3D - 56 121 IPR038088 -
Seca5g01942 586 ProSiteProfiles GRAS family profile. 208 580 IPR005202 -
Seca5g01942 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 168 576 IPR005202 -
Seca5g01942 586 SMART DELLA_2 58 131 - -
Seca5g01942 586 FunFam DELLA protein GAI 56 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01942 Seca-Chr5 56013702 56015534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01942 1 581 GRAS Transcription Factor Family AT2G01570 60.390 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g01942 GRAS 1.8e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01942 K14494 - gmx:100799695 923.694