Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01928 ATGGCTTCTTCCTTGGATATGTCACTGGACGATAGAATAAAGAACAGGAGTAACAACAGAGGGAGAGGTAGAGGACGTGGCAGAGCCCGTTCTGGCCGTGGGCCAAGCGGGACTCTTAGTGGTGGAAGAATGACTGGTGCTGTTAATGGTAGAAGAATGGCTGGTCCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAAAGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAGGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTGGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAACAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAGTTGCCTATATCTGCTCGTGTGAATGTCACTGGGATGAATGGACAGAGGAAGAGAACAGTTGTAATGACGCCTAGAGGTGGTCGAGCTGGAGGTCCTGCCATGCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGCGGGAGCGGGAGTGGGAGTGGGCGTGGGCGTGGTCGAGGCCGTCGTGGCAGGGGTGGAGGCCGAGGTCGAGGAAGAAAGGATGCAACTGAGAAGTCAGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATGCTGAGGCCATGCATATCTCATGA 888 0.4944 MASSLDMSLDDRIKNRSNNRGRGRGRGRARSGRGPSGTLSGGRMTGAVNGRRMAGPGNGGRTSGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQKDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGMNGQRKRTVVMTPRGGRAGGPAMPNRGAGWGRRGGTRSGSGSGSGRGRGRGRRGRGGGRGRGRKDATEKSAEELDKELETYHAEAMHIS. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01928 295 Coils Coil 270 290 - -
Seca5g01928 295 Pfam C-terminal duplication domain of Friend of PRMT1 232 289 IPR025715 -
Seca5g01928 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Seca5g01928 295 SUPERFAMILY RNA-binding domain, RBD 22 189 IPR035979 GO:0003676
Seca5g01928 295 SMART FoP_duplication_2 225 295 IPR025715 -
Seca5g01928 295 CDD RRM_THOC4 115 189 - -
Seca5g01928 295 MobiDBLite consensus disorder prediction 266 295 - -
Seca5g01928 295 MobiDBLite consensus disorder prediction 1 71 - -
Seca5g01928 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Seca5g01928 295 MobiDBLite consensus disorder prediction 217 295 - -
Seca5g01928 295 SMART rrm1_1 116 188 IPR000504 GO:0003723
Seca5g01928 295 Gene3D - 108 275 IPR012677 -
Seca5g01928 295 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01928 Seca-Chr5 55581780 55586837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01928 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.44e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01928 K12881 - gmx:100801491 432.565