Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01923 ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACTGCTGAGGAGGACAAGAAGCTCATCAATTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGTGGGAAAAGTTGTAGGCTTAGATGGACAAACTATCTGAGACCAGACCTAAAGAGAGGTCTTCTATCAGAATATGAAGAAAAAATGGTCATTGATCTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTACCTGGAAGAACTGATAATGAAATCAAGAACCACTGGAATACCCACATTAAGAAAAAGCTCAAAAAAATGGGAATTGATCCTGTTACCCACAAGTCACTATCTAATTCTTCTGAGCAAAACCAAACACAACCTGAACAACAACACCAACAATCATCACCAGTTGACTTGGAACCCAAATTTGAACCTGAAAATGACCAAAATAAGGAGCCAGAGAAGTCAGAGACTTCATTTGAGTCATCGACTATCACTGAAGCCAAAGAGGAAGACCAAATTATGACACCCCTATTTGACTCAATGGAACTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATAAAACCTGATGAGATTCTAGTTCCCTATGCTCCTTCAACTTCATCAACAAGTACATCATCATCTTATGCTTCAAATTCAAATTCATCAAACTTCCTTGAAGACTTGGTGCTCCCAGATTTCGAGTGGTCTCATAATTACAATGACAATAATAATATTGAAAATATGAACAACAACAACAATAGCAGTGTGGCCTTGTGGGATGATGACTTTTTGAGAAGTTGGGATTTTCTTATTAATGATGATGATGGTGACAGAAAGCAAGTGTTTGATGCTCCTCTTATTAATCAATACCCAAGAATGATCATGGATTCAGAATCTTGGGCCTATGGATTGTTTTGA 966 0.3923 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSNSSEQNQTQPEQQHQQSSPVDLEPKFEPENDQNKEPEKSETSFESSTITEAKEEDQIMTPLFDSMELMNGFCTDEVPIIKPDEILVPYAPSTSSTSTSSSYASNSNSSNFLEDLVLPDFEWSHNYNDNNNIENMNNNNNSSVALWDDDFLRSWDFLINDDDGDRKQVFDAPLINQYPRMIMDSESWAYGLF. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01923 321 Gene3D - 70 149 - -
Seca5g01923 321 SMART sant 66 114 IPR001005 -
Seca5g01923 321 SMART sant 13 63 IPR001005 -
Seca5g01923 321 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 217 - -
Seca5g01923 321 MobiDBLite consensus disorder prediction 154 185 - -
Seca5g01923 321 CDD SANT 16 61 IPR001005 -
Seca5g01923 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca5g01923 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca5g01923 321 FunFam MYB transcription factor 11 67 - -
Seca5g01923 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca5g01923 321 FunFam MYB transcription factor 70 147 - -
Seca5g01923 321 Gene3D - 11 67 - -
Seca5g01923 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca5g01923 321 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Seca5g01923 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca5g01923 321 CDD SANT 74 112 IPR001005 -
Seca5g01923 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca5g01923 321 MobiDBLite consensus disorder prediction 125 150 - -
Seca5g01923 321 MobiDBLite consensus disorder prediction 124 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01923 Seca-Chr5 55485450 55487744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01923 1 321 MYB Transcription Factor Family AT5G16600 49.003 1.65e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g01923 Myb_DNA-binding 9.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01923 K09422 - gmx:100803624 486.878