Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01917 ATGGTCATAACGAAAACCAACTTTTCCCTCTTAATCTTCGCCACCGTTATTGTTCTTTCTCTTTCTTTCTCTTCCTCCTCCACGGATTTATTCCTCTACGGCGGGTGCACGCAACAAAGGTACAACCCTAACTCGCCCTACGAGTTCAACCTCAACTCACTCCTCACCTCGCTGGTCAACTCAGCCACCTACTCCTCCTACAACAACTTCACCGTCGTCGGCTCCTCCGCCAATGACGTCGTCTACGGCCTCTACCAGTGCCGAGGAGACCTCTCCATGCCGGACTGCGCCACCTGCGTCTCGCGCGCCGTCACCCGCTCCGGCGAAATCTGTCCGGCGACGTGCGGCGGCGTCATCCAGCTCGACGGGTGCTACGTGAAGTACGACAACGCGTCGTTCTTGGGGACGGAGGACAAAACGGTTGTGTTGAAGAAATGTGGGCCCTCGGTCGGGTATGACCCGGGTGAGAGGGACGCGGTTCTTTCCAGGTTGGCGGGTTCGGGTGGTTATTTTCGGGTCGGTGGTTCGGGTCGGTTGAAGGGTGTGGCGCAGTGCACTGGGGACTTGAGTTTCGCGGAGTGTCAGGATTGCGTGGCGGAGGCTATCAGACGGTTGAGGAGTGATTGCCCCGCGGCAGATTACGGGGACATGTTCTTGGCTAAGTGTTACGCCAGGTACGCCACTGGTGGGGCCCATGCTTACTCCAAGGCCCATGGTGTAAATCGGACGATGAAGGTGAGAAGACATTTGCTATAA 756 0.5714 MVITKTNFSLLIFATVIVLSLSFSSSSTDLFLYGGCTQQRYNPNSPYEFNLNSLLTSLVNSATYSSYNNFTVVGSSANDVVYGLYQCRGDLSMPDCATCVSRAVTRSGEICPATCGGVIQLDGCYVKYDNASFLGTEDKTVVLKKCGPSVGYDPGERDAVLSRLAGSGGYFRVGGSGRLKGVAQCTGDLSFAECQDCVAEAIRRLRSDCPAADYGDMFLAKCYARYATGGAHAYSKAHGVNRTMKVRRHLL. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01917 251 ProSiteProfiles Gnk2-homologous domain profile. 134 231 IPR002902 -
Seca5g01917 251 Pfam Salt stress response/antifungal 176 227 IPR002902 -
Seca5g01917 251 Pfam Salt stress response/antifungal 36 130 IPR002902 -
Seca5g01917 251 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 8 239 - -
Seca5g01917 251 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Seca5g01917 251 FunFam cysteine-rich repeat secretory protein 3 28 133 - -
Seca5g01917 251 Gene3D - 158 229 IPR038408 -
Seca5g01917 251 Gene3D - 28 133 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01917 Seca-Chr5 55374074 55376376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01917 10 226 Pollen Coat Proteome AT4G20670 27.500 1.42e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01917 - - gmx:100811615 358.992