Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01903 ATGGTATTGTCTTGGACCAGGAAGAATGTTTTCCGCCGTGCCCGCAAGGGGAAGGAACAAGTTTCCGGTGGTGATTTGGAAGTGGAGATTGCGATCCCCACTCATTTCCGGTGCCCTGTGAGTTTGGATTTGATGAAAGACCCCGTGACTCTACAAACTGGCATCACCTACGACAGGGGAAGCATTGAGAAGTGGGTTGAAGCAGGGAACAAAACTTGCCCTGTTACCAATCAAGTTCTCACAACCTTTGACATGATCCCCAACCATACCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAACAGTTCTTATGGGATTGAAAGGATCCCAACTCCTCGGATACCCATTTCTGGCTACGAGGTTTCTGAGATTTGTTCTAAGATGTTGTCTGCTTCTCAGCGTGGGGATGACAACAAGTGCCAGGAATTGGTGGCAAAGATCAAGGCTTTAGGGAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTAGGGAATGGAGCAGGTGCTGTTTTTGCCACTGCCTTTGATTCTTTTTCAAGGGACTCTATTCACAAGCATGTGGTTATTTTGGAGGAGATCTTGGAAGTTTTGACATGGATGATCCCACTTGGTGAAGAGGGTCAATCCAAATTGGGTTCAGCACCTTCTTTGCATTGCATGGTTTGGTTTCTAGAAAGTAAAGACCTTGCAGCAAGGCAAAATGCTGCTTTGTTGCTCAAGGAAGTGGGTGTTGAGGAATTGGCCAAAATTGAAGGGATTGTTGAAGGTTTGATGAAGATTGTTAGGGAGCCTATTGGTTCTACTGCTGCTACTAAGGCTTGTTTGGTAACAATTTTCAAATTGGTTTCCTCAGCTGGTAATAGAGAGGCAATTGCTAAGAGATTTGTGGAATTGGGTTTGGTTTCACTCCTGCTAGAAACAATTGTTGAAGCTGAGAAAGGGATATGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGACTGCAAAGAAGGGAAGGAGGTTGCCCAAATGAATGCTCTAACATTGCCTCTTGTGGTTAAGAAGATATTGAGAGTGTCCCAATTGGCTTCCAATTTTGCAGTGTCTGTTCTTAGAAAGATATGTGACAAGAGGGAAGAAGAAATCTTGATTGAGGCACTTCAAGTGGGGGCTTTTCAGAAACTCTTGGTTATGTTGCAAGTTGGTTGTGATGAGAGCACAAAGGAGAATGCTACCGAGCTGTTGAAACTGTTGAATGGTTACAAGAGCAGAGCAGAGTGTGTTGACTCCTCATTGGATTTCAAGTATCTTAAGAAGCCCTTCTGA 1308 0.4442 MVLSWTRKNVFRRARKGKEQVSGGDLEVEIAIPTHFRCPVSLDLMKDPVTLQTGITYDRGSIEKWVEAGNKTCPVTNQVLTTFDMIPNHTIRRMIQDWCVENSSYGIERIPTPRIPISGYEVSEICSKMLSASQRGDDNKCQELVAKIKALGRESERNKRCIVGNGAGAVFATAFDSFSRDSIHKHVVILEEILEVLTWMIPLGEEGQSKLGSAPSLHCMVWFLESKDLAARQNAALLLKEVGVEELAKIEGIVEGLMKIVREPIGSTAATKACLVTIFKLVSSAGNREAIAKRFVELGLVSLLLETIVEAEKGICEKALGVLDCICDCKEGKEVAQMNALTLPLVVKKILRVSQLASNFAVSVLRKICDKREEEILIEALQVGAFQKLLVMLQVGCDESTKENATELLKLLNGYKSRAECVDSSLDFKYLKKPF. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01903 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Seca5g01903 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Seca5g01903 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Seca5g01903 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Seca5g01903 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Seca5g01903 435 SUPERFAMILY ARM repeat 129 412 IPR016024 -
Seca5g01903 435 SUPERFAMILY RING/U-box 27 108 - -
Seca5g01903 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Seca5g01903 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Seca5g01903 435 Gene3D - 121 417 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01903 Seca-Chr5 55046250 55047557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01903 27 435 U-box Gene Family AT5G37490 50.962 4.87e-138 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01903 - - gmx:548086 668.692