Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01901 ATGAGGATTCGAAATCACAACACCCACTTCACAAAGCTCAAAACTTTCCCCATTTTCCTATCTGGGTTCCTCTCACTCTTCCTCTTCGTCCACTCCCAGCCAACCTCACAAGATGCCCCCGCAATGCTCGCTCTTCGGACCTCCCTCAACCCGCCCGAATCCCTCGGTTGGTCCGACCCGGATCCATGCAAGTGGATAAACGTCGGCTGCTCCGACGACAAACGGGTCACCCGGATCCAAATCGGTCGCCAGGGCCTCCAGGGTACCCTCCCCAACAGCACCACTCTCCAAAGCTTAACCCAGTTAGAGCGCTTGGAGCTCCAATACAACAACATTTCGGGACCTCTTCCGAGCTTAAACGGGTTGAGTTCCCTCCAAGTTGTTATGCTCAGCAACAACGGTTTCACTTCCATCCCAAGCGATTTCTTCTCTGGTTTGTCACAGCTTCAATCCGTGGAGATCGATAACAACCCTTTCCAAGGTTGGGAAATCCCTGACAGCCTCCAAAACGCTTCTTCTCTTCAGAACTTTTCAGCTAATTCCGCCAACATCATAGGAAAAATCCCAGATTTTTGGGGCCTTCTTCCTGGTTTGACCCACTTGCATTTGGCCTTCAATAGCCTTGAGGGTGTGTTGCCTTTGAGCTTTGCTTCATTTCAGGTTCAGACTCTCTGGCTGAACGGGCAAAAAGGTGATGGTGCTAACAGGCTTGGTGGTACTGTTGAGGTTTTGCAGAACATGACTTCGTTGACACAGGTTTGGTTGCATTCTAATGCGTTTACTGGGCCCTTGTCAGATTTCTCGGGCTTGCAAAGCTTGGAAGATTTGAGCTTGAGGGATAACTCTTTTACTGGTACTGTTCCTGGTTCCTTGATGGGACTCAAGTCCCTCAAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGGCCAGTGCCTGTGTTTGGTAAAGGAGTTGAGGTGGATATGGATATAAGTGATGATACCAATAGCTTTTGCTTGCCAGGTCCTGGTGATTGTGATCCCAGGGTGAAGATTCTGCTTTCTGTTGTTCGGCCTTTGGGGTATCCCAAAAAGTTTGCTGAGGATTGGAAGGGGAATGATCCATGTACTGAGTGGATTGGGGTTACTTGTAGTGATAGGAACATTACTGTTGTTAATTTTCAGAAGATGGGTCTTACAGGTACCATATCCCCTGAGTTTGCTTCACTTAAATCACTGCAAAGATTGGTACTTGCTGATAATAACCTCACTGGTTCAATTCCTGAGGAGCTTACCACTCTGTCTGGGCTTACTGAATTGGATGTTGCAAACAATCAGCTTTATGGAAAAATACCAAGTTTTAAGAGCAATGTAATTGTGACTACAAGTGGTAATAAGGATATAGGGCAGGATAAACCCAGCCCATCATCCCCTATAGGTCCATTGTCACCAAACTCAACAGCTCCAAACACAAAGGAAGAAAATGGTAGCAAAAAATCTAACCATGTTGGAGTAATTGTGTTTGCTGTGATTGGGGGTGTAGTGTTGGTTTTGGTGATTGGTTTCTTAGTTTTCTGCTTGTTTAGGATGAAGCAAAAACGGCTAAGCAGGCATTCTGGATCAGATAATGAGGGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGGGTTGGTTCTGTTAGTGAAACCCAAACCATGCCTGGCAGTGAAGCAGGGGATATTCAGATGGTTGAATCAGGAAACATGGTCATTTCTATACAAGTCTTGAGGAATGTCACTGACAATTTCAGTGAGAAAAACATATTGGGACAAGGAGGTTTTGGAACAGTTTATAAAGGTGAATTGCATGATGGTACAAAAATTGCAGTGAAAAGAATGGAGTCTGGGGCAATATCTGGGAAAGGTGCAACAGAATTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGGCATCTTGTGTCTCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGAACATTGAGTAAGCATCTTTTTGACTGGATAGAAGAAGGACTGAAACCACTAGAGTGGAATAGGAGATTGACCATTGCCTTAGATGTAGCAAGGGCTGTTGAGTACCTTCATAGCTTGGCCCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAACATTCTACTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTCCGTCTTGCTCCAGAAGGAAAAGCTTCAATAGAAACAAGAATTGCAGGAACTTTTGGATACTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTAGATGTGTACAGCTTTGGGGTAATATTGATGGAACTGATAACTGGAAGAAGAGCACTAGATGAGACCCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAATAAGGACACATTCCGGAAGGCCATTGACCCCACAATCGAGCTCAATGAGGAAACACTTGCTAGTATTCACACAGTAGCTGAGTTAGCTGGCCATTGCAGTGCAAGGGAGCCATATCAAAGGCCTGACGCAGGTCATGCTGTGAATGTGCTTTCTTCTCTTGTAGAACTATGGAAACCTTCTGATAACAATTCTGAAGACATATATGGCATTGATCTAGACTTGTCTTTACCACAAGCACTAAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATGGAGTCTTCTTCTTCTTCACTCCTTCCTAGCTTGGATAACACACAAACTAGCATACCTACCCGGCCTTATGGATTTGCTGAGTCTTTCACATCAGCAGATGGTAGATGA 2829 0.4475 MRIRNHNTHFTKLKTFPIFLSGFLSLFLFVHSQPTSQDAPAMLALRTSLNPPESLGWSDPDPCKWINVGCSDDKRVTRIQIGRQGLQGTLPNSTTLQSLTQLERLELQYNNISGPLPSLNGLSSLQVVMLSNNGFTSIPSDFFSGLSQLQSVEIDNNPFQGWEIPDSLQNASSLQNFSANSANIIGKIPDFWGLLPGLTHLHLAFNSLEGVLPLSFASFQVQTLWLNGQKGDGANRLGGTVEVLQNMTSLTQVWLHSNAFTGPLSDFSGLQSLEDLSLRDNSFTGTVPGSLMGLKSLKVVNLTNNLFQGPVPVFGKGVEVDMDISDDTNSFCLPGPGDCDPRVKILLSVVRPLGYPKKFAEDWKGNDPCTEWIGVTCSDRNITVVNFQKMGLTGTISPEFASLKSLQRLVLADNNLTGSIPEELTTLSGLTELDVANNQLYGKIPSFKSNVIVTTSGNKDIGQDKPSPSSPIGPLSPNSTAPNTKEENGSKKSNHVGVIVFAVIGGVVLVLVIGFLVFCLFRMKQKRLSRHSGSDNEGVKITVAGSSVRVGSVSETQTMPGSEAGDIQMVESGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAISGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFDWIEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRRALDETQPEDSMHLVTWFRRMYVNKDTFRKAIDPTIELNEETLASIHTVAELAGHCSAREPYQRPDAGHAVNVLSSLVELWKPSDNNSEDIYGIDLDLSLPQALKKWQAYEGRSQMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR. 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01901 942 Gene3D Ribonuclease Inhibitor 341 465 IPR032675 -
Seca5g01901 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672|GO:0006468
Seca5g01901 942 FunFam receptor protein kinase TMK1 551 666 - -
Seca5g01901 942 MobiDBLite consensus disorder prediction 458 491 - -
Seca5g01901 942 ProSitePatterns Protein kinases ATP-binding region signature. 595 617 IPR017441 GO:0005524
Seca5g01901 942 FunFam receptor protein kinase TMK1 667 884 - -
Seca5g01901 942 Gene3D Ribonuclease Inhibitor 35 339 IPR032675 -
Seca5g01901 942 Gene3D Phosphorylase Kinase; domain 1 550 666 - -
Seca5g01901 942 CDD STKc_IRAK 595 868 - -
Seca5g01901 942 Pfam Protein kinase domain 590 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01901 942 SUPERFAMILY Protein kinase-like (PK-like) 566 873 IPR011009 -
Seca5g01901 942 MobiDBLite consensus disorder prediction 908 942 - -
Seca5g01901 942 SMART LRR_typ_2 122 145 IPR003591 -
Seca5g01901 942 SMART LRR_typ_2 195 218 IPR003591 -
Seca5g01901 942 SMART LRR_typ_2 403 427 IPR003591 -
Seca5g01901 942 SMART LRR_typ_2 270 293 IPR003591 -
Seca5g01901 942 SMART LRR_typ_2 99 121 IPR003591 -
Seca5g01901 942 FunFam Leucine-rich repeat receptor-like kinase 341 464 - -
Seca5g01901 942 MobiDBLite consensus disorder prediction 908 931 - -
Seca5g01901 942 Gene3D Transferase(Phosphotransferase) domain 1 667 885 - -
Seca5g01901 942 SUPERFAMILY L domain-like 60 449 - -
Seca5g01901 942 SMART serkin_6 589 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01901 942 Pfam Leucine rich repeat N-terminal domain 346 378 IPR013210 -
Seca5g01901 942 Pfam Leucine rich repeat N-terminal domain 37 71 IPR013210 -
Seca5g01901 942 ProSiteProfiles Protein kinase domain profile. 589 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01901 942 PANTHER OSJNBA0070M12.3 PROTEIN 23 942 - -
Seca5g01901 942 FunFam Receptor-like kinase TMK4 36 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01901 Seca-Chr5 55013780 55017324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01901 88 871 Receptor kinase-like Gene Family AT5G07280 31.818 9.52e-83 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca5g01901 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01901 K00924 - gmx:100813768 1448.34