Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01896 ATGAAACCTAACTTTGATCTTGAAGTGGAGGATACTGAAGTTAGCAGCCAGGTTGCTTCCAATATATCTGAAGGTCCTTGTAGTGATAGCCTCGCTAACTCTTCTAACATCACAAATCCAACAGAGCTTCATTCCCATTCAGATACTATCTCACTTGACTTAACTCTCAACTTCAACAATAATGACTTGGTAGGTAGAGATTCAGCAGGATTCTCATTCTCAAGCACAAGTGAGAGCAGCAATGAACCAACCATCTCAAGAGTTTTCTATTGCAATTACTGTCAGCGTAAATTTCTTAGCTCACAGGCTCTTGGTGGCCACCAAAATGCACACAAGAGAGAAAGGACATTAGCAAAGCGAGCTATGAGAATGGGGTTTTTATCTGAGAGGTATTCTAGTCTAGCATCTCTCCCTCTTCATGGTTCTTTTAGGTCCTTAGGGATAAAGGCACACTCTTCACTGCACCATGGTTTTCCACCAACAATAAGGCCTCCTCCTCCTAAGTTAAAAAGCAATGCAAGATTTGAACAAGGATATCTTGGTCTTCCAATATTTTGGAAGGATGATGAGGCAGAACTGTTGTGGCAAGGTAGTTTTCATCAGGTTCCTGAGGGAGGTAGTGATACTCATCAGAATTTCATACAGACTGAAAGTTCAAATTTGAGTTTTACTGAGGTGAATCCACCAGTTGAGAATTCCACACCTGAATTAACTTTGAAACTTTCGTCATCCTCTTCCTCGCCACCACCATCATCCTCTTCCTCGCCACCACCGTCATATCCGCGGCCCCCTCCGCCGCATCCGAAATCTAACCTACGCGATCCGTTTGAGGAAATAAGACCGAAACCACAGCGAACTTACTTCGAACAAAGATCGATCAAGAGAGTGCGAAAGGAACTCAGGCAAGACAAATCCCTCCTCCACGGCTTCAAACTCCAACCACACGCCACCGACCTCCTCGAATCCATCGACCTCTCCTCACTGCAAGACGCAATCCAAAACTACGCCTTAACCAAGAATCCCTCCACCAAAACCGTTTTCGATTCCCTCGCTTACAATTACCCTAATTCCTTTTCCTTCAAGCTCGCCAAACTCATCCAACGCAACCCTCCCTCCCTCATCCGAACCGAATCTGTCTCTCTCCTCCGCAGCACAATCACCGACATGAGAAGAAAAGTCAGTTTAGCAATGCTCAACGAACTCAAAGAACCTCTCCTCCACTCCATCAAGGTAGAACCCGAACAATCTTTGCTCCCTGCGCTCTGCGAAATCATCGGAAACGTGGCTTCTAGAATCTACAATTATCCTTTAGGTGACTGGCTAGAGCTTCTTCAGTACATTTACTCCTGCTGCATTTCCGGTGACACGTCATTGCAGAATACGAAAGGGCTCATGCTATTAGCAGAACTGCCTGTAGAATCCGCTGAAAACAGAGCGTTCTGGGACGAGCAGGGGAACTACGACACGCTATTCGGGATTATCTTGATGTTAACGGATTCACCAGATGATGAATTGCATGCGTTAGCAATGGATGCCTCGATGACGCTGATGGGAATGTCGAAGAATCTTGGGAGACCCGGAGTGTGCGATTATCTTTTACCGTTACTATTTGAATTCATCGACCGGAACGGGGAAGAAGAGAAGTTGGTGTTGGACAGGGTTCGGCGGTTGGTGGATTTGGTTACGCTGAATGTTGGTGAAATCTTCCAAGGGAGAGAAAGTGACTTGTTTCATTGCATGCTTCGGCTCGCGGAGAAGGAAGGTGTGAGTGAGGAGGTGAGGTGTTCGGCGGTGGTTGTTATGAAGGAGCTTGATGAGGTGAACATGGATGCGATGCACGAATTGGTAAAAAACCTGCCTCAACAGGACGTGAAGAGGCTACTTGTGGTTTCTATGGAGATGATGTCGTGTGTTTTAGAGACTACTACTTGGCATGAAGTGGACGAAAAGAAGTGTCATGAGCTTGGGATGACAGAGACTTTCAACAGTGGGAAGTTCTTGCTAAATTGGCTCTCTTTTGAAGGGAATGTGAGTGTGGTGATTCCGACTGCACTTGAGATTATAACAGGGACTTATGCAGGTCATGAGGATTGGCGGAAACGTCATGCTGCAATGATTGCCCTTGGTACAGTTGCAGAGGGACAAAAAAAGGTATATGACATTGTTGTGCGCTTTAATCTAATTGAGAAACTGGTCCTTACGTTACTCGATGATATGCATCCCCGAGTAGTTTGGGCTACGATACATGCAATTAGGTGTTTGAGCGAATATAAGGAGCTACTAGTGCGTACCCAATTTCATGTGAAGATCTTGAATCGACTAGTTACCCTCACTGGCTTTAGCCTTTGTCCCCGTCTACAGGCATATGCTGTTATAACCATTCGTTACTTGGTTACAAATTGTGGCTTAGCCAACTTGGCTTCTTTAGCAGAAAAAATTGTAACATCATTGCTTTCACTTCTTAAGGATGACAGGCAGAGGTTACAGGAAGAAGCTGCGGAAACCCTGAAATCAATTGCACTTACAATACCGGCTACTTTTCGTGAACATCATTACGAGAGAACAATAGAATCACTGGAAGCCATTGTGCTTGCTAACTATCGTAAACCCAAATTGTTGCTCCGTGCCAAATGTCTAGAATGCATTAGTAGTCTTGTGAGGAAAGTTGAACAAGACAAGTTCAAAGGAGAGGAAGCGGATGATGTGATGGAGGCTCTACTAAAACTATATGAAAGACTGAAAGATACTGATTACTTAGCAAAAAGTCTCATCTTAAAGGCACTGGATCAATTATGTCGATGCCGAGCAGTGCAACAGCAATTTCACAAATTTATCGATAGAATGATGTCGATGTTGCTTGAATCTGCTGAACTTGACATTGACTTAAAAGCGGATGAAGATGATAGCCTAGATGATACCAGGTATTTGATCGAAACTGTGAGAATTCGGGCTTGTAATATATTGGCATACTGTGCTGTTCTATCACCGCCAAGATTTTCCAATGACATTTTCAAGGTCTCTAATCTATTTGTGCGCTGGCTTGATTGTTCTAGTTTTGAAACTAGAAAGGCTTGTATTTCAGGTCTTCCTAGCCTATTGGTTGTAGTTAAATTAGGTATCCAAGATCCACCGTCCCAAAGAGCTTTGACTGCCCTCATTGTAAAACCTCTGGTTCAGGCATTAAATAAAAAGGATTATGATAGTGGTTTGCTTTTAAGCATGTTGAAGTCACTACCCAAGTGCATTCAGACCTCTGGTCCATTTATCCTTAGTCACCTAATCCAGATGATTTCCGAGGAGATAATCCGATTAGTAGATAACATTGTTGAAATGGAACTTTTAGCACAATCATCTGAATCTGATGACAGCGAAAGTGATGAAGATGTACCATTAGAAGAAATAGTTCGGGAAACAAAGCTTTTCATAACAGTAACAATGGAAACATTTGGCTCTCGATTCTTGCCATTCGTTGATAACCTTATGTCAAATGTAGAAAAGTATATGGATGATAATTTCCCAGATGAAGTGAAAGCTTTGGCAATTTCCGTTTACAACCTTATTTTACCACATTTCACAGAAAAACCAACGCATCTTAATAAGTATGTTTGTTTCCTCTTGCAAGTTTTGAGGGATGCAAATCATCTTTATGCCCGGCCGGTAGCTGCACAGGGGGTTGGTGTCTGTGCTATGTTTGGAGGAGCTAGATTCAGACCTTTGGCTATAGTGTCTATGTCACGTCTATGCAGTGTAATAATAGATGAAAGATTTTCAACTAGGACAAGGTTATATGATACGACAGTTGCAGCTCTTGGGAAAATTTGTGAATTTCAGCGTGAATATATTCGAGGCCCAAAGACATTGAGCCTTGAGTGCATATAG 3879 0.431 MKPNFDLEVEDTEVSSQVASNISEGPCSDSLANSSNITNPTELHSHSDTISLDLTLNFNNNDLVGRDSAGFSFSSTSESSNEPTISRVFYCNYCQRKFLSSQALGGHQNAHKRERTLAKRAMRMGFLSERYSSLASLPLHGSFRSLGIKAHSSLHHGFPPTIRPPPPKLKSNARFEQGYLGLPIFWKDDEAELLWQGSFHQVPEGGSDTHQNFIQTESSNLSFTEVNPPVENSTPELTLKLSSSSSSPPPSSSSSPPPSYPRPPPPHPKSNLRDPFEEIRPKPQRTYFEQRSIKRVRKELRQDKSLLHGFKLQPHATDLLESIDLSSLQDAIQNYALTKNPSTKTVFDSLAYNYPNSFSFKLAKLIQRNPPSLIRTESVSLLRSTITDMRRKVSLAMLNELKEPLLHSIKVEPEQSLLPALCEIIGNVASRIYNYPLGDWLELLQYIYSCCISGDTSLQNTKGLMLLAELPVESAENRAFWDEQGNYDTLFGIILMLTDSPDDELHALAMDASMTLMGMSKNLGRPGVCDYLLPLLFEFIDRNGEEEKLVLDRVRRLVDLVTLNVGEIFQGRESDLFHCMLRLAEKEGVSEEVRCSAVVVMKELDEVNMDAMHELVKNLPQQDVKRLLVVSMEMMSCVLETTTWHEVDEKKCHELGMTETFNSGKFLLNWLSFEGNVSVVIPTALEIITGTYAGHEDWRKRHAAMIALGTVAEGQKKVYDIVVRFNLIEKLVLTLLDDMHPRVVWATIHAIRCLSEYKELLVRTQFHVKILNRLVTLTGFSLCPRLQAYAVITIRYLVTNCGLANLASLAEKIVTSLLSLLKDDRQRLQEEAAETLKSIALTIPATFREHHYERTIESLEAIVLANYRKPKLLLRAKCLECISSLVRKVEQDKFKGEEADDVMEALLKLYERLKDTDYLAKSLILKALDQLCRCRAVQQQFHKFIDRMMSMLLESAELDIDLKADEDDSLDDTRYLIETVRIRACNILAYCAVLSPPRFSNDIFKVSNLFVRWLDCSSFETRKACISGLPSLLVVVKLGIQDPPSQRALTALIVKPLVQALNKKDYDSGLLLSMLKSLPKCIQTSGPFILSHLIQMISEEIIRLVDNIVEMELLAQSSESDDSESDEDVPLEEIVRETKLFITVTMETFGSRFLPFVDNLMSNVEKYMDDNFPDEVKALAISVYNLILPHFTEKPTHLNKYVCFLLQVLRDANHLYARPVAAQGVGVCAMFGGARFRPLAIVSMSRLCSVIIDERFSTRTRLYDTTVAALGKICEFQREYIRGPKTLSLECI. 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01896 1292 MobiDBLite consensus disorder prediction 219 285 - -
Seca5g01896 1292 SUPERFAMILY ARM repeat 1048 1276 IPR016024 -
Seca5g01896 1292 MobiDBLite consensus disorder prediction 219 249 - -
Seca5g01896 1292 SUPERFAMILY ARM repeat 347 1101 IPR016024 -
Seca5g01896 1292 SUPERFAMILY beta-beta-alpha zinc fingers 87 116 IPR036236 -
Seca5g01896 1292 PANTHER IMPORTIN BETA 339 1281 IPR040122 GO:0006606
Seca5g01896 1292 MobiDBLite consensus disorder prediction 20 42 - -
Seca5g01896 1292 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Seca5g01896 1292 MobiDBLite consensus disorder prediction 250 270 - -
Seca5g01896 1292 Coils Coil 818 838 - -
Seca5g01896 1292 Gene3D - 327 1289 IPR011989 -
Seca5g01896 1292 Gene3D Classic Zinc Finger 67 135 - -
Seca5g01896 1292 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Seca5g01896 1292 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01896 Seca-Chr5 54936817 54946491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01896 83 241 C2H2 Transcription Factor Family AT1G66140 48.438 8.49e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01896 K20222 - cave:132182123 374.015