Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01890 ATGCCCTTGGAAGGGATTTTCATTGAACCCACTTCAACTACAACTCCTCATCCTGATCTTTCTCTTCACATAAGCCCACCAACCACTTCCTCCTCTTTGATTTGTAACAACAACACCACCACCCAAGTAGCACCTTCTGGTGGCACAACCAATTATGAACCTCACAATCCAACTAATTTTATTTTCCCTTCAAGGACAGTGTCTCAAGCTCACACTGAGCTCTCTCTTGGAAGGAATTTCAGTGGTGGTGAAGAACCACCACCACCACCACCACCACATAACCACCCTTATTATCAACCCCAGTTCCATCCTCTCCACCACCACTCTAACACTACAACAACAACAACAACTAGCACCACCACCATGAATCACATAAATTATGGGGTTTCATTGCTTGATGTGTCATCAACAACACCAGAAGGATTGAGGCCAATCAAGGGGATTCCTGTCTATCACAACCGTTCCTTCCCTTTCTTACCTATGGAACATTCTAGAGACAAAGATCATCATCCTCCTCATCCAAAGATGTGCTTATATCATCACATCCCTTCTTATCCTTCTTCTTCATCCTCTCTCTCTTCCACCACTCCTTCTTCTTCTTATGGGGGTTTGGATCCCATCTCCCTTTTGAACTCCGGCAGCTCAGCAGCATATAGAGCCGCCGCCGCCACAAGGTTTAATGGGATTTCCGGTGAGCCTTTCAAATCTCATCATCACCATCCATTGCACCATCATCATCACTCACACTATGGACCTTCCTCACATGAAGCATCTTCTGGGTTGATGAGATCAAGGTTTTTGCCTAAACTCCCAACAAAGAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGCACCCTCCATGCTCGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCTGGAGAAGATGACATGTCTCCCATAGGGAGCAGTGGTGGTATGCGTCAATTTCAAGACCAAAGAGGTCTGCCAGATAGGCCAGTGCAACAAGATATGGACTATTCTTCAAATGCCACTCTATGGAGCAATTCTTCAAGGTACCAAGAGCCATGGCCACAAACTAGTTCCAGCGACGTAGAAGGTTTTAGATCAACTATCTTCCAGTCACAACCAATATCAGGAGGGCATCAAATTCAGGAGTGTGATTCAACTCAACTCAAGAACAGTTTGTCAGGATCTAATTTAGAGTGTAAGAATCCAAGCTTGGAATTCACATTAGGCAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1401 0.4511 MPLEGIFIEPTSTTTPHPDLSLHISPPTTSSSLICNNNTTTQVAPSGGTTNYEPHNPTNFIFPSRTVSQAHTELSLGRNFSGGEEPPPPPPPHNHPYYQPQFHPLHHHSNTTTTTTTSTTTMNHINYGVSLLDVSSTTPEGLRPIKGIPVYHNRSFPFLPMEHSRDKDHHPPHPKMCLYHHIPSYPSSSSSLSSTTPSSSYGGLDPISLLNSGSSAAYRAAAATRFNGISGEPFKSHHHHPLHHHHHSHYGPSSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPIGSSGGMRQFQDQRGLPDRPVQQDMDYSSNATLWSNSSRYQEPWPQTSSSDVEGFRSTIFQSQPISGGHQIQECDSTQLKNSLSGSNLECKNPSLEFTLGRPDWNGKGQA. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01890 466 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g01890 466 NCBIfam myb-like DNA-binding domain, SHAQKYF class 279 332 IPR006447 GO:0003677
Seca5g01890 466 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 463 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca5g01890 466 MobiDBLite consensus disorder prediction 83 98 - -
Seca5g01890 466 SUPERFAMILY Homeodomain-like 276 332 IPR009057 -
Seca5g01890 466 Gene3D - 278 335 - -
Seca5g01890 466 MobiDBLite consensus disorder prediction 334 380 - -
Seca5g01890 466 MobiDBLite consensus disorder prediction 77 117 - -
Seca5g01890 466 MobiDBLite consensus disorder prediction 230 259 - -
Seca5g01890 466 FunFam Myb family transcription factor 277 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01890 Seca-Chr5 54734311 54739602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01890 1 463 G2-like Transcription Factor Family AT5G16560 40.081 2.91e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca5g01890 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01890 - - ccaj:109796302 604.364