LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g01880	ATGCCACCACTTTCCATCTTCATCTTCCTCAACGCTGCTACCACCTTCTTCTTCTTCTTCGCCGCCGCAGCAACACAATTCGACTTTGACACCTTAACCTTAAGCACCCTCAAGCTCCTCGGCGATGCCCACCTCAACAACAACACCGTCAGCCTCACCGGCGATCCTGCCGTCCCCAATTCCGCCGCCGGCAGAGCCCTTTACTCCACTCCCATCAGATTCCGGCAATCGGGTAACCCCCTTTTGGCCAGCTTCACCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCCTCCGTCGGCGGCGGACTCGCCTTCCTCATCTCGCCGGACGCCGACGCCGTCGGCAACCCCGGCGGCTTCCTTGGCCTCGGTGGCTCCTCTTCCTTCCTCGCCGTCGAATTCGACACCCTCATGGACGTGGAATTCAACGACATTAACGGCAACCACGTCGGCGTCGACCTCAACACCGTCGTTTCAAGCCAAGTTGGTGACTTGGGAACCATCGGAATCGATCTCAAGAGCGGTGACTCAGTGAACGCGTGGATCGAATACGATGGAACCACCAAAGGGCTTAACATTTGGGTTTCCTACTCGAATGTGAAACCCAAAGATCCAATTTTGAAGGTGGATCTTGATGTGGGTCAGTACGTGAATGAGTTCATGTACGTGGGTTTCTCTGGGTCCACACAGGGTAGCACAGAGGTTCACAATGTGGAGTGGTGGAGTTTCACCTCCAATTTTGATTCCACGCCACCACCTTCAGCTCCTTCTGCTCAACAAAAAGAGAGTAAATCTTCTTGCCACAGTGGTTTGTGTAAGCAAGGTATGGGAGCAGTTGCTGGGGTTGTCACTGCTAGTGCTTTTGTTCTTGCTCTGTTTGCTGGTGCATTGATTTGGGTGTATTCCAAGAAGGTGAAGCGTGTGAAGAGGTTTGAATCGCTTGAGTCAGAGATCATCAGAATGCCTAAGGAGTTTACCTATAAGGACCTCAAATTGGCCACAAGGTGCTTCAGTGCTAATAGGGTCATTGGTCATGGTGCGTTTGGGACTGTCTATAAGGGGGTATTGCCTGAGAGTGGTGACATTGTTGCTGTGAAGAGGTGTAACCATAATGGTCAAGGTAAGAATGAGTTTTTGTCTGAGTTGTCTATAATTGGGAGCCTTAGGCATAGAAACCTTGTTCGCCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTATTGGTGTATGACTTGATGCCAAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGAATACCTTTACCATGGCCTCATAGGCTTAAAATTTTGTTAGGTGTGTCATCTGTTTTGGCCTATTTGCATCATGAGTGTGAAAATCAGGTGATTCATAGAGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCCAGGTTAGGTGATTTTGGTTTAGCTAAGCAAACGGAGCATGACAAGTCCCCTGATGCCACAGTGGCTGCTGGAACAATGGGGTACCTGGCTCCTGAGTATGTGCTTACAGGTAGAGCCACTGAGAAAACTGATGTGTTCAGTTATGGTGCTGTGGTTCTTGAAGTGGCTAGTGGGAGAAGACCTATAGAGAAAGATGCTACTGGGGCTGGTAAAGGTGGGGTTAGAAGCAATTTGGTAGAATGGGTTTGGAATTTGCACCAGGAAGGGAAGTTACTAATGGCAGCTGATCCAAGGCTTGAGGGTGAGTTTGATGAAGGGGAGATGAGGAGGGTGCTATTGGTTGGCTTAGCTTGTTCACACCCTGATTCAATGGCAAGACCAACTATGAGGGGTGTGGTTCAGATGCTGCTAGGTGAAGCTGAAGTGCCAATTGTCCCTAGAACCAAGCTATCTACTAGTTATAGTACTTCCCAACTCTTGATGACATTGCAAGATAGTGAATCTGACTCCAATGCTATAATCACCATCTCTACCTCCTCATCAGAGAACAGTTTCAATGATAGAGATATAGTCTGA	2004	0.4845	MPPLSIFIFLNAATTFFFFFAAAATQFDFDTLTLSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSTPIRFRQSGNPLLASFTTFFSFSVTNLNPSSVGGGLAFLISPDADAVGNPGGFLGLGGSSSFLAVEFDTLMDVEFNDINGNHVGVDLNTVVSSQVGDLGTIGIDLKSGDSVNAWIEYDGTTKGLNIWVSYSNVKPKDPILKVDLDVGQYVNEFMYVGFSGSTQGSTEVHNVEWWSFTSNFDSTPPPSAPSAQQKESKSSCHSGLCKQGMGAVAGVVTASAFVLALFAGALIWVYSKKVKRVKRFESLESEIIRMPKEFTYKDLKLATRCFSANRVIGHGAFGTVYKGVLPESGDIVAVKRCNHNGQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALYEARIPLPWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLAKQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDATGAGKGGVRSNLVEWVWNLHQEGKLLMAADPRLEGEFDEGEMRRVLLVGLACSHPDSMARPTMRGVVQMLLGEAEVPIVPRTKLSTSYSTSQLLMTLQDSESDSNAIITISTSSSENSFNDRDIV.	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g01880	667	FunFam	L-type lectin-domain containing receptor kinase VIII.1	23	259	-	-
	Seca5g01880	667	ProSitePatterns	Protein kinases ATP-binding region signature.	345	368	IPR017441	GO:0005524
	Seca5g01880	667	PANTHER	-	48	622	-	-
	Seca5g01880	667	Pfam	Legume lectin domain	25	254	IPR001220	GO:0030246
	Seca5g01880	667	SUPERFAMILY	Protein kinase-like (PK-like)	321	650	IPR011009	-
	Seca5g01880	667	CDD	lectin_legume_LecRK_Arcelin_ConA	41	249	IPR001220	GO:0030246
	Seca5g01880	667	Gene3D	Phosphorylase Kinase; domain 1	301	414	-	-
	Seca5g01880	667	SMART	serkin_6	339	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g01880	667	FunFam	L-type lectin-domain containing receptor kinase VIII.1	415	630	-	-
	Seca5g01880	667	Gene3D	-	23	259	-	-
	Seca5g01880	667	Gene3D	Transferase(Phosphotransferase) domain 1	415	619	-	-
	Seca5g01880	667	CDD	STKc_IRAK	345	612	-	-
	Seca5g01880	667	Pfam	Protein kinase domain	341	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g01880	667	ProSitePatterns	Legume lectins beta-chain signature.	132	138	IPR019825	-
	Seca5g01880	667	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	249	IPR013320	-
	Seca5g01880	667	FunFam	L-type lectin-domain containing receptor kinase VIII.1	303	414	-	-
	Seca5g01880	667	ProSiteProfiles	Protein kinase domain profile.	339	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g01880	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g01880	Seca-Chr5	54276362	54278389	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g01880	4	649	Receptor kinase-like Gene Family	AT3G53380	65.698	0.0	877

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca5g01880		Pkinase	8.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g01880	-		-	gmx:100815895	1060.06