Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01879 ATGGTTCTTTCAAAAACAGCCTCCGAGTCCGACGTCTCCGTCCACTCAACCTTTGCTTCCCGCTATGTCAGGACTTCTCTTCCCAGGTTTAAGATGCCAGAAGAGTCAATACCGAAGGAGGCAGCATACCAGATCATAAACGATGAATTGATGCTGGATGGGAACCCAAGATTGAATCTAGCATCGTTTGTGACAACATGGATGGAGCCAGAGTGTGACAAGCTCATCATGGCTGCCATTAACAAGAACTATGTTGACATGGATGAATACCCAGTCACCACTGAGCTCCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTTAATGCACCACTTCAAGACTCTGAGGCTGCAATTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATCATGTTGGCTGGTTTGGCATTCAAAAGGAAGTGGCAGAACAGAAGGAAGGAAGAGGGAAAGCCTTTTGACAAACCCAACATTGTCACTGGAGCCAATGTCCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTCGAGGTGGAGTTGAAAGAGGTGAAACTGCGTGATGGATACTATGTAATGGACCCTGAAAAGGCTGTGGAATTGGTTGATGAGAACACCATTTGTGTTGCTGCTATTCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTCCTCATTGAAAAAAATAAGCAAACTGGATGGGACACTCCTATTCATGTGGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATTTATCCAGAGCTTGAGTGGGACTTCCGTTTACCACTAGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGTCTAGTCTATGCTGGAATTGGTTGGGTTATCTGGAGAAGCAAGGAGGACTTACCTGAGGAACTCATCTTTCACATCAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCCCAATATTACCAACTAATTCGCCTTGGTTATGAGGGATATAGAAATGTGATGGAGAATTGTAGGGACAACATGTTAGTGTTGAAAGAGGGACTTGAGAAAACAGGGCGCTTTGAAATTGTGTCGAAAGACAATGGTGTGCCTTTGGTAGCCTTCACATTGAAGGACCACACACACTTTGATGAATTCCAAATCTCTGATTTATTGAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCTCCAGATGCACAACATGTGACAGTGCTACGTGTTGTCATTAGAGAGGACTTCTCAAGGACCCTTGCAGAGCGTCTTGTGGCTGATGTGGAGAAAGTGTTGCATGAGCTTGATTCACTTCCAGCAAGGGTGATAAGTAGCACTAGCACCACTGTGACAGTTACTGCGGAAACAGCTAACAACAATGGAAAGGTAGTTAAAAAGAGTGCTCTAGAGACCCAAAGGGAAATCACTGCACTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGATGAATGACAAGATGAATGGTGTTTGCTAG 1521 0.449 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQDSEAAIGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFEIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTSTTVTVTAETANNNGKVVKKSALETQREITALWKKFVLERKKMNDKMNGVC. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01879 506 Gene3D - 66 360 IPR015421 GO:0003824
Seca5g01879 506 FunFam Glutamate decarboxylase 1 65 - -
Seca5g01879 506 Gene3D - 361 448 - -
Seca5g01879 506 FunFam Glutamate decarboxylase 361 448 - -
Seca5g01879 506 CDD DOPA_deC_like 59 439 - -
Seca5g01879 506 PANTHER GLUTAMATE DECARBOXYLASE 1 497 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca5g01879 506 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca5g01879 506 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Seca5g01879 506 Gene3D - 1 65 - -
Seca5g01879 506 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca5g01879 506 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01879 Seca-Chr5 54264335 54272255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01879 1 506 Calmodulin-binding Proteins AT5G17330 83.399 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01879 K01580 - gmx:100796533 961.059