Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01875 ATGGTGTTGGTTGATTCTGAGGGTGGAAGAATTCAAGCAAGCATTCGAAAAGCCATGCTGAGGAGATTTATGGACTCTGTTGCTGAAGGTGGTGTGTATAGGATGACTTACTTTGGATTTATGGATAATGGTGGTTCTTACAGGGCCACATCCCATGAGTTCAAGCTTTTGTTTCAAGCAAGAACAAGAGTTCTCCCTGCTGAAAGTATCAGTATTCCAAGATTTGGATTAGATTTGAAGGATACTGAATATGTCAAAAATACTAAGGGTGAATGTGACTATTTGATTGATATTATTGGATTAGTGACAACTATTCGTGAAAAGAAGCAGTATGATCGAAATGGGAGGATCATTAGAGTTATGGATGTGGAGCTCACTGATGACAAGGGATCTGTCAAATGTTCACTTTTTGGACATCTTTTTGATCTTATGAATGGTGACGTGTCTATTCAAACAATGAGTAACTCAAGTAGGCTATTGTGGAATCCACAAATTCCAGAGGCTATTTCATTTAAGAATGGTATTGTGGAACATGGTTTTGATACCAATCTTCCACTTGGAGTTATTGGTGACAATGATCGTTCCTACACTGTTAGAGAGGAGTTTATATCTGTTTTTCCCAGGAAGACAATTGAAGATCTTCAATTAACTGAAGAGGATGGAATCTTTATATGTTTCGGGAAAGTTGACAGTATTGTGAAAGATGGTGCATGGTGGTATCTTTCTTGCACTTGTCTCAAAGCTGTGAATTTGGGTGAAGATGGTGAGGGATATTTTTGTCCTAAGTGTGAGGCCAATGTTACTGATGTCATCCCTAGATTTAGGTTGAGGTTAGAGGTCAATGATGGACATGAAAAAGCCCATTTTGTCATTTTCGATTCTGATTGTGAGACTTTGTTCTCTAAGAAGTGTGGTGACATGATTGTTGAGGTTAAGGATCCAAATTGTTTTGAGTATCCTCAAGAGCTGTATGCTATTATAGGTAAGGAAATGCTTTTTAAGGTGTCATTGAAGGATGATCGTGCTTTCTCTTTTGATGATTCCTTTAAAGTGAAGAAAGTTTGTCAAGATGAATCAAAGATGAAAGCCCCATTCACTGATTTATGTGATGATGGTAAAAATTCTGAAGTTGATGTTAATTATGTTGCTTTGGATGATGTTGTTAATCACCCTGGATTGTCTCCCATATCCTTGGCTGAGTCCTCCAATCCCTCTGCCTGTTTGGCCCCTGAGAAGAGGAAGGATGCTGCCCGAGTTGATGTCCCTCCAGTTTGCAAGAAGAGGGGAAAAGGAAGAGCTTTGAAGATTGAGCAGTAG 1317 0.3903 MVLVDSEGGRIQASIRKAMLRRFMDSVAEGGVYRMTYFGFMDNGGSYRATSHEFKLLFQARTRVLPAESISIPRFGLDLKDTEYVKNTKGECDYLIDIIGLVTTIREKKQYDRNGRIIRVMDVELTDDKGSVKCSLFGHLFDLMNGDVSIQTMSNSSRLLWNPQIPEAISFKNGIVEHGFDTNLPLGVIGDNDRSYTVREEFISVFPRKTIEDLQLTEEDGIFICFGKVDSIVKDGAWWYLSCTCLKAVNLGEDGEGYFCPKCEANVTDVIPRFRLRLEVNDGHEKAHFVIFDSDCETLFSKKCGDMIVEVKDPNCFEYPQELYAIIGKEMLFKVSLKDDRAFSFDDSFKVKKVCQDESKMKAPFTDLCDDGKNSEVDVNYVALDDVVNHPGLSPISLAESSNPSACLAPEKRKDAARVDVPPVCKKRGKGRALKIEQ. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01875 438 CDD RPA1_DBD_C 209 354 IPR047192 -
Seca5g01875 438 Gene3D - 78 179 IPR012340 -
Seca5g01875 438 Pfam Replication factor-A C terminal domain 225 352 IPR013955 -
Seca5g01875 438 SUPERFAMILY Nucleic acid-binding proteins 1 71 IPR012340 -
Seca5g01875 438 CDD RPA1_DBD_A_like 1 64 - -
Seca5g01875 438 Gene3D - 200 363 IPR012340 -
Seca5g01875 438 SUPERFAMILY Nucleic acid-binding proteins 89 174 IPR012340 -
Seca5g01875 438 SUPERFAMILY Nucleic acid-binding proteins 206 355 IPR012340 -
Seca5g01875 438 Pfam Domain of unknown function DUF223 1 70 IPR003871 -
Seca5g01875 438 Gene3D - 1 66 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01875 Seca-Chr5 54218853 54222661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01875 3 337 Core DNA Replication Machinery Family AT5G08020 22.554 2.99e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01875 - - lja:Lj1g3v3385890.1 327.791