Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01869 ATGGCACCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCTACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATTGAGTTGGAGATTATCCCTGAAGTTGATCTCTACAAATGTGAACCATGGGACTTGCCAGGGAAGTCATTGTTACCTGGAAAAGATTTGGAGTGGTATTTCTTCAGTCCAAGAGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACGAAATCAGGGTATTGGAAAGCCACAGGGAAAGATCGTAAGGTGCACTCTCAGAGTCGTGCAGTTGGAATGAAGAAAACCCTAGTTTACTATAGAGGTAGGGCACCACATGGCTCTCGCACTGGTTGGGTTATGCATGAATACCGTCTTGATGAGAGAGAATGTGAAACTAATTCAGGCTTGCAGGATGCATATGCTCTTTGTCGTGTGATCAAGAAGAGTGCAGTGATTGCCCCAAAAGTTGGGGAACAATATGTTAATAATAATGTCAGCACCAGGCATGCAAATCAGATTACAAGTGATCAATCATCAGCTAGCATTGAGCTGTACACTGATGGAAGAGGTGAAGTTTTAGAGAGCTCGAATTATTTGATGCCTTGGGATACATGCTCAACCCAATTAAACATGAATGGGACTAATAATAATAATGTCAATATCAATGGTGGGACAAGGGATAATGGAATGTGGTCACATTTCTTATCAGAAGACTTACTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGAGCCATACCTTACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCTAGGATGCAACATAGGTTTTCCATGCCTCCTTTGGAAGTGGAAGACTTCCCTCAAGTTGGCATTTCTGAGCTGAGGATGACACAAGCCTCAGGTTCCATGTGTGGAGGCAGAAATGAAACAGATATCTTGCAGGAAATTCTCTCAGTTGCTCAAGCTTCCCAGGACTTGATAAATCAATCCAACTATTCACAGGCATTGGGTGGCAATGAAAATTATGCTCCTCATGAAAATGATTTTACTTTTATGGTTGATACTAATTACAATCATGTGAATGATATGAACTCCATGAGATATGTTGACAAGGCATGGGAAGATATGAACACAAGATCAATAGAGATCAGGGATTTTGATGATGATTTCAAGGCAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTAGAAAAGAGTTTTATGGAAGAGCAAAAGGTTGTTCCTATTAAGGATGTTTCAAGCTTCCAAACAAACAGGGAAGAGAATGAGGTGCAAGCTGAATCTGAGCAACACAATAGCAACAAAGGACTGAATGATACTGACATTGAAGATTTCTCATTGGGGTTCATCAATGATGATGACCCCAATGAGAACTTTATAGATGACAGTAACATTGATTATTCAAATTCTACAAGCTTTGAGCTTGTTGAGGAAACAAAAGTCAGTCATGGAATGTTTGTTTCAACTCGTCAAAAGGCTGATACTTTCTTTCACCAAATAGCTCCTTCACAAACCCTCAAAGTTCAGCTCAACCCAGTAATGGCAAATAAACAATATTCTATAGAGAATGCAGAGACATTGAACCAAGGGCACTCTTTCTTTAGGAAGTTTAAGGCTTATGTGATGGGGAAACTGAAAAAGCCATCAAAGACAATAGCAAGTGCCCTTGTATTCATCTTTGCACTTTTGTTGATGCATTTTGTTTATCTGAAGGAGCAAGTAGAAGAATGGAAACCAAGCCCAGAGGATGTGAAAAATAAATGTTGCTCTAATGCTAACAACATGAAGAGAATGATAGCACCTGCTGAGAAAATCATATGGAATGAGGAAGAAAAAATTGGGTTTGTTAGTATTAAAAGTGGGGAAGGATTTAGTGTGTGGTCTTGA 1947 0.3965 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVHSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECETNSGLQDAYALCRVIKKSAVIAPKVGEQYVNNNVSTRHANQITSDQSSASIELYTDGRGEVLESSNYLMPWDTCSTQLNMNGTNNNNVNINGGTRDNGMWSHFLSEDLLNLPTSSSSFPNYGAIPYPPSKVDIALECARMQHRFSMPPLEVEDFPQVGISELRMTQASGSMCGGRNETDILQEILSVAQASQDLINQSNYSQALGGNENYAPHENDFTFMVDTNYNHVNDMNSMRYVDKAWEDMNTRSIEIRDFDDDFKAERMVENLRWVGMSSKDLEKSFMEEQKVVPIKDVSSFQTNREENEVQAESEQHNSNKGLNDTDIEDFSLGFINDDDPNENFIDDSNIDYSNSTSFELVEETKVSHGMFVSTRQKADTFFHQIAPSQTLKVQLNPVMANKQYSIENAETLNQGHSFFRKFKAYVMGKLKKPSKTIASALVFIFALLLMHFVYLKEQVEEWKPSPEDVKNKCCSNANNMKRMIAPAEKIIWNEEEKIGFVSIKSGEGFSVWS. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01869 648 MobiDBLite consensus disorder prediction 437 458 - -
Seca5g01869 648 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Seca5g01869 648 MobiDBLite consensus disorder prediction 442 458 - -
Seca5g01869 648 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 246 - -
Seca5g01869 648 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Seca5g01869 648 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Seca5g01869 648 FunFam Nac domain-containing protein 86 15 159 - -
Seca5g01869 648 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01869 Seca-Chr5 54100926 54109157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01869 1 589 NAC Transcription Factor Family AT1G65910 48.007 3.80e-170 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g01869 NAM 6.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01869 - - gmx:100818019 1008.05