Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01867 ATGACAATGGGAGGAGGAGAACAGTCCTTGGCACCACTCCCATTTGACAGAACTCTTGAACAGGTCACACATTTTTCTTCCTCTTCATGTTTCTTAACCAATTCTGCTCCTTCTTCACCTTCTCTTTTCACATGTTTTCAAAATCATGCTCTTTCTGGTGTTTATATGTTCAAAGCTTTTCTTCTCTTTTTCAAAAATTTCAAATTGGTTTGCTTCTGGATTGAATTCCTTGGCTTCATTGCCAATGAAGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGCAGAGGAAAGCCAAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCAGGCCAGCAGGAAAAACATTTACGATTGAGTGCAGTTACAAAAATTATTCAAGGGCAAGGAAATATAAAGTCCCAGAGGCAAAATGAACTTGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGAGAAAGATCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGCCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGTAAAGGGGTGCAAAGTTGTGTTAGTAGTCCAGCTGGAATATTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGATAACTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCTGCTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTGTCATATACATCTGATAACATTTATTCATCCGCATCTTTCCTCTCCAGCACTCATGGCATAACAGATTCCGTCCCAAGTTCTCCATATATTGATTCAGATATTCATCGAAAGATTGAATCAACACGTGTTGACAAGGAACACAAGAATTTGTCCTACAGGTCTCTGATGCCTCCTACCTCCCCACATGTAGGAAATAACAATGTATTAAAAGATGTAATGATATGGGGTGGAGGAATTGGATGTCTTGTAGGGATTGTAAATGAAAGGTTTGTCCAAAATGGAGTTTATTCTTTAGTGCCAAAGTTACTGGAATCCACTGCAATGTTAGATGTACAAAATATAGCCTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGACAAGGGAAATGGGGAAGGCTTGGGCAAAAAATTGATATGGACATTAGCTCTCCCAAAGTAGTTGATTCTCTTAGTGGAATTCATGTAAAGCATGTTGCTTGTGGTGAGTATCATACAAGTGCTTTGACAGATTCTGGTGAAGTATATACATGGGGGAATGATGTTTGTTGTTCAGATTTAGTTGATGAAGGTAGAATTAGAAGTCAGTGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTGTTGCTTGTGGTGAATGGCACACTGCACTTGTCTCTAGCTGTGGACGGTTATTCACATATGGAGATGGTACATTTGGAGTACTAGGCCATGGGGATCTTCGGAGCTCTTCTAGACCAAAAGAAGTTGAATCTCTTAGTGGTCTAATGGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATACTCCTACTGGTAAGCTCTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTGTACCAACATGTGTTGCACAACTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAACATGGGGAAGGTTTTTGCAATGGGAAGTGCTAAATTTGGGCAACTTGGAAATCCACATGCAAGAGATAAAGCAGTTATGGTTGAAGGACAACTTAAGCAAGAGTTTGTTAAAGTGATATCATCTGGTTCATATCATGTTGCTGTTTTGACATCTGCAGGGAGTGTGTATACATGGGGCAAAGGTGAAAATGGGCAATTGGGGCTAGGTGATACTGAAGACAGACACATACCTTGTTTTGTTGAGGCTCTAAGAGACAGGCAGGTAGACACTATCACTTGTGGTCCAAGTTTCACAGCTGCAATATGTTTGCACAGACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTACCTTTTGGGTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTTTGAAAGACAGCAAGGAAGTACACATTCAGCTATGTCATCAAAGTCTAGAAATTACAATACTCAGCAGATATTGAAGCATCAAAACAAGATTGGTGATCTCACTGAAGATAGGGGAGAAACAACTGTGACACAAGGTCCTCTATTGTCTCTCAGTCAATCTTGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCATGAATTAGAAGATGGTTCTTATAGGTTAGGTGGAGTGCCACAATGTGGGAAAGTTCCATGCCCTGTCCTATTTAAAAACAATAGTACAGAAAATTCAGCTGTGCAAGTTTCTTCATCCAAAAATAAATTAGCTTCTGTTTCACCACTGAATGTAGAATCTACAGAATACAACTTCCCCAATGCAGAGACAGATACAATAAAGTCTGAGAAGATGCTCAAAGAAGAAGTTCAGAAGCTGAGAGCTGAGGCTAAGAGACTTGAAGAGCAGTGTGAACTCAAGAACAACAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGAGTGTAGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCTAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAGTAACAGGAAAAGATAATGCTGGACAAGAAGGAAAGGTTGGGCTACCTGAATTTCTTCCTAATTTGGCACCCATACATACAACAGATATGAATAGTCCAAGAGATGGAAACATGGACAGTCTATCCAATTCCCCTATAGTATTCTCTGACACTTTCAAATCCAAATTTGGGAAAAGTATGTTCCTAAAAAATGATAGATTGATGGAGAATTCTAACTTCACTAGAGCAGAACCTCAACAAGACACTGCAGATAGCTTAAAGGCGGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGTAAAAGGGGCCTTAAGAGAGTGAGATTTAGCCGGAAGCGGTTCTCACAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGGTACAGTGTACCATAAGTATGAGATTGAAGGATATATGAACACTAGCCAAGGTCAGGTGAAAGGCTAA 3414 0.4025 MTMGGGEQSLAPLPFDRTLEQVTHFSSSSCFLTNSAPSSPSLFTCFQNHALSGVYMFKAFLLFFKNFKLVCFWIEFLGFIANEAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTKIIQGQGNIKSQRQNELEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDNSQFTQVHSVCASPALSLSERCFSDGLSYTSDNIYSSASFLSSTHGITDSVPSSPYIDSDIHRKIESTRVDKEHKNLSYRSLMPPTSPHVGNNNVLKDVMIWGGGIGCLVGIVNERFVQNGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKVVDSLSGIHVKHVACGEYHTSALTDSGEVYTWGNDVCCSDLVDEGRIRSQWIPHKLSGPLDGISISSVACGEWHTALVSSCGRLFTYGDGTFGVLGHGDLRSSSRPKEVESLSGLMVRSVACGSWHTAAIVEVMFDRFRYNTPTGKLFTWGDGDEGRLGHADNGSKLVPTCVAQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKFGQLGNPHARDKAVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHIPCFVEALRDRQVDTITCGPSFTAAICLHRPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKVINASLAPSKSKAFRVCDQCFERQQGSTHSAMSSKSRNYNTQQILKHQNKIGDLTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQESQHELEDGSYRLGGVPQCGKVPCPVLFKNNSTENSAVQVSSSKNKLASVSPLNVESTEYNFPNAETDTIKSEKMLKEEVQKLRAEAKRLEEQCELKNNKIQECQQKIEESWSVAREEAAKCKAAKEVIKALALRLHTVTGKDNAGQEGKVGLPEFLPNLAPIHTTDMNSPRDGNMDSLSNSPIVFSDTFKSKFGKSMFLKNDRLMENSNFTRAEPQQDTADSLKAEWVEQYEPGVYITFTTLPCGKRGLKRVRFSRKRFSQKEAERWWEENQGTVYHKYEIEGYMNTSQGQVKG. 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01867 1137 SUPERFAMILY RCC1/BLIP-II 327 710 IPR009091 -
Seca5g01867 1137 Gene3D - 550 716 IPR009091 -
Seca5g01867 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 607 657 IPR000408 -
Seca5g01867 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 530 540 IPR000408 -
Seca5g01867 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 491 IPR000408 -
Seca5g01867 1137 SUPERFAMILY PH domain-like 80 190 - -
Seca5g01867 1137 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 125 979 - -
Seca5g01867 1137 SUPERFAMILY FYVE/PHD zinc finger 713 791 IPR011011 -
Seca5g01867 1137 Gene3D - 319 449 IPR009091 -
Seca5g01867 1137 Gene3D - 450 544 IPR009091 -
Seca5g01867 1137 SMART fyve_4 708 777 IPR000306 GO:0046872
Seca5g01867 1137 Pfam Transcription factor regulating root and shoot growth via Pin3 1067 1122 IPR013591 -
Seca5g01867 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 658 709 IPR000408 -
Seca5g01867 1137 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 714 776 IPR017455 -
Seca5g01867 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
Seca5g01867 1137 ProSiteProfiles BRX domain profile. 1068 1123 IPR013591 -
Seca5g01867 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Seca5g01867 1137 CDD PH_PLC_plant-like 83 191 - -
Seca5g01867 1137 Gene3D - 77 197 IPR011993 -
Seca5g01867 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 436 487 IPR000408 -
Seca5g01867 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 492 540 IPR000408 -
Seca5g01867 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 555 603 IPR000408 -
Seca5g01867 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 658 706 IPR000408 -
Seca5g01867 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 385 433 IPR000408 -
Seca5g01867 1137 Pfam FYVE zinc finger 716 774 IPR000306 GO:0046872
Seca5g01867 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 478 488 IPR000408 -
Seca5g01867 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Seca5g01867 1137 Coils Coil 915 949 - -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 478 494 IPR000408 -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 653 674 IPR000408 -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 437 453 IPR000408 -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 368 381 IPR000408 -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 596 614 IPR000408 -
Seca5g01867 1137 PRINTS Chromosome condensation regulator RCC1 signature 494 508 IPR000408 -
Seca5g01867 1137 CDD FYVE_like_SF 719 772 - -
Seca5g01867 1137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 787 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01867 Seca-Chr5 54057835 54065638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01867 1064 1127 Major Intrinsic Protein MIP AT1G31880 45.312 1.05e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01867 - - gmx:100797223 1824.68