Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01864 ATGGCAATTCAAGATCAAAATGGATTTACTAGACCAAGGGTTGGTCCTCCAGTAGGAAATGGAGTATCTTTGAGTTCTGGACAACATTCTGTTGCACATATTCAACTTAATGATCAGTTTTCTTGCGGAAATGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGATGGACAGATGAAGAGCATAAGAAGTTCCTTGAAGCTTTAAAGCTGCATGGCCGGGCCTGGCGACGCATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGCAGGTTCTTCGTGACTCTAGTGGGAAAATTACAAACACTGAGGAATCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAACCGATGCATCCTTACCCTCGTAAGCTAGCTGAGACCCCTAATAAAGAAATTTCGATCCCAGAAGAGCTGATGAAGTCTAATTCTCTGAAGTCATCAGATTTTGATCAAGACAACCAATCTCCCAAATCAGTGTTATCTGCAGTTGGTTCAGACAGCCTTGGTTCCTCTGATTCAGATACACCAAATGGAAGTCTATCCCCAATGTCATCCATTAGTGGTGTCCATACAAGTGGTTTTACACTTGCTGAACCCAAAACACCATCTGAGGAAGCTGCATTAAATTCTGATTCACCTCATGATGAAAAACCTCTTATGAAGTTCGAGGTTCTCCCCAATGAAAGTGTTTCAGTCAAGGAAGACACATCAGAAGAATCATCCGGTCGAACTCTCAAACTTTTTGGGATGACTCTATTTGTAAATGATACCTGCAGACCATCATTTCCTCCAACAATTGAGGCATACAAACCAATACCTCTAACTATAGGTGTTCATTGCCTTAGCAAGGAGGATGGAAAATTGCAACTTGTTGGCCAGAGTACACCAAGTGAAACACCAGCAACATCCAAACTAAGGGTGAGAGTGAGACCTGAAACATGTGGGAAAGGGTTTGTGCCATATAAAAGGTGCACCCCAGAGAAAGGGAACCAGTCTTTATCAGTAACAGCTCATGAGAGAGAGGAGCAACGCATTCACCTTTCCTTATAG 1107 0.4201 MAIQDQNGFTRPRVGPPVGNGVSLSSGQHSVAHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKQVLRDSSGKITNTEESIEIPPPRPKRKPMHPYPRKLAETPNKEISIPEELMKSNSLKSSDFDQDNQSPKSVLSAVGSDSLGSSDSDTPNGSLSPMSSISGVHTSGFTLAEPKTPSEEAALNSDSPHDEKPLMKFEVLPNESVSVKEDTSEESSGRTLKLFGMTLFVNDTCRPSFPPTIEAYKPIPLTIGVHCLSKEDGKLQLVGQSTPSETPATSKLRVRVRPETCGKGFVPYKRCTPEKGNQSLSVTAHEREEQRIHLSL. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01864 368 PANTHER SWI/SNF COMPLEX-RELATED 43 297 - -
Seca5g01864 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Seca5g01864 368 MobiDBLite consensus disorder prediction 353 368 - -
Seca5g01864 368 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Seca5g01864 368 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Seca5g01864 368 MobiDBLite consensus disorder prediction 158 217 - -
Seca5g01864 368 MobiDBLite consensus disorder prediction 115 236 - -
Seca5g01864 368 SMART sant 59 107 IPR001005 -
Seca5g01864 368 Gene3D - 62 109 - -
Seca5g01864 368 MobiDBLite consensus disorder prediction 1 24 - -
Seca5g01864 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 108 IPR006447 GO:0003677
Seca5g01864 368 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Seca5g01864 368 FunFam protein REVEILLE 6 isoform X1 62 109 - -
Seca5g01864 368 MobiDBLite consensus disorder prediction 348 368 - -
Seca5g01864 368 CDD SANT 62 105 IPR001005 -
Seca5g01864 368 MobiDBLite consensus disorder prediction 126 144 - -
Seca5g01864 368 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01864 Seca-Chr5 53953594 53957223 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g01864 Myb_DNA-binding 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01864 - - gmx:780539 536.184