Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01817 ATGGCCCCTAATTCTTTAGAATTCAATATTGGTGAAGATATATTAGAAGGAGGACATGGCGTTAATTTAGCCATACAATGGGTAAGTTCAATTGTGTTTCCCTTGACTTTGCAGGCAGTGACCGAGCTGGGCATATTTGATATCATAGCCAAATCTGGTGAAGGTGCCAAACTCTCTGCAAATGACATTGCATCTCAAATTGCCACCAACAACCCAGAAGCAGCCACAATGCTAGATCGTCTTCTTAGGTATTTGGCTAGTCACTCTGTGTTACATTGCTCTATCCTTGAAGATCTTGGATCACCTCAACGTCTCTATAGCCTCACCCCTGCTTCCAAATATTTTTTGACTGATGCTGATGGTGTCTCACTTGGGCCCTTCTTGGCCTTGCTTATGGACAAGGTCCCCACTCAAAGCTGGTCAGTATTTATGTTGACTTGTAGGACCAAACTAAAAGAAGTGATCCTAGAAGGCGGTGTACCATTCAAGAGTGTGTATGGCATGCATCTCTTTGAGTACACAAGGGTAGATACCAGGTTTAATGATGTTTTCAATAAAGGTATGCTTAGCTCCACCACTGTGACTATGAAGACGATTCTTGAACTCTACAATGGTTTTGAGCACATTAATAGATTGGTGGATGTTGGTGGTGGTCTTGGGGTTAATCTCAAATTGATCACTTCCAAATACCCTCATATCCAAGGTGTTAATTTTGACCTGCCTCATGTCATTGAACATGCTCCTTCCTATGCTGGCGTGGAGCATGTAGGGGGAGATATGTTTGAGGGTGTACCTAAAGGAGATGCCATTTTTATGAAGTGGATTCTTCATGATTGGGGTGATGAACACTGCATAAAGCTCTTGAAGAATTGCTATAAAGCTGTTCCTGATGATGGAAAGGTTATTATCGTGGACACGATCCTTCCCACCGTGCCTCAAACAACAACAACGGCTAAAAATGCTTTCACATATGACCTTTTCATGTTGGCTGAATTTCCAGGAGGGAAGGAGCGAACCCAACAAGAATTCATGGAGTTGGCAACGAAATCTGGATTTAGTGGCATCAAAATCGTATGCTGTGCTGCTAGCTTTTGGGTTATGGAGCTTTTTAAGTAG 1116 0.4256 MAPNSLEFNIGEDILEGGHGVNLAIQWVSSIVFPLTLQAVTELGIFDIIAKSGEGAKLSANDIASQIATNNPEAATMLDRLLRYLASHSVLHCSILEDLGSPQRLYSLTPASKYFLTDADGVSLGPFLALLMDKVPTQSWSVFMLTCRTKLKEVILEGGVPFKSVYGMHLFEYTRVDTRFNDVFNKGMLSSTTVTMKTILELYNGFEHINRLVDVGGGLGVNLKLITSKYPHIQGVNFDLPHVIEHAPSYAGVEHVGGDMFEGVPKGDAIFMKWILHDWGDEHCIKLLKNCYKAVPDDGKVIIVDTILPTVPQTTTTAKNAFTYDLFMLAEFPGGKERTQQEFMELATKSGFSGIKIVCCAASFWVMELFK. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01817 371 PANTHER O-METHYLTRANSFERASE 28 352 IPR016461 GO:0008168
Seca5g01817 371 Gene3D - 32 199 IPR036388 -
Seca5g01817 371 FunFam Caffeic acid O-methyltransferase 116 371 - -
Seca5g01817 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 146 368 IPR029063 -
Seca5g01817 371 Gene3D Vaccinia Virus protein VP39 181 361 IPR029063 -
Seca5g01817 371 Pfam Dimerisation domain 36 86 IPR012967 GO:0046983
Seca5g01817 371 Pfam O-methyltransferase domain 150 353 IPR001077 GO:0008171
Seca5g01817 371 PIRSF O-mtase 16 371 IPR016461 GO:0008168
Seca5g01817 371 SUPERFAMILY "Winged helix" DNA-binding domain 22 118 IPR036390 -
Seca5g01817 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 371 IPR016461 GO:0008168
Seca5g01817 371 FunFam Caffeic acid 3-O-methyltransferase 12 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01817 Seca-Chr5 52798705 52801138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01817 23 371 Monolignol Biosynthesis Gene Families AT5G54160 52.571 4.80e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01817 K13066 - gmx:100789402 464.922