Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01809 ATGCTGCAACACAAGCTCCTAGCCTTAACCCTGTTCATGTTGTTGTGGTCATGGAGAAACTTCCACGGTGCACTAGCAGATCCTCAAATCCGTTTACTCAACAAAGGTTGCAGCCAATACAACGCCACCGACTTGTCCAATTTCAACCAAAATCTAAACGCAACTTTGGCAAACCTGAAAGCACAGGTGAACAACCAAAGCAAGCACTTTGCAACAGCACAAGAAGCCAGAGGAGCAGACCCTGTCTATGCTCTGTTTCAATGTAGGAATTACCTCTCCAACGCTGATTGCGCCGCCTGCTTCACCGCCGCCGCCGCTCAAATCCGCAATTGTTCCGCCGGTGCCAACGGTGCCCGCGTCATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGCTTTTTCGACCAAACCACTTTGCCTGGCAACAGTATGATTTGTGGAAATCGAACTGCAAATGGAGCCACTGCTTTTAGTACAAGTGCACAACAAGTGCTAATGGATCTACAAACGGCAACACCCAAAATTCCTGGTTTCTTTGCAGCTACCAAGACACCCGTGGCTAGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGTCACAGAAAGTGGTTGTTTGGATTGTTTAACAGTTGGATACAACAACATAGAGAGTTGTTTTCCTAATACAGATGGTAGGGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACCTCATTCTTTGCTGATAACCAAACCATTGACATTACACCATTCTTAAAACAAGGAGGTTCAAGCAAGAAAGGGGCCATTATTGGTGGTGTTGTTGGAGGTGTAGCTCTTTTTTTTATCATCCTTGCACTGTTTGTTTGGCTTAGGCGTTACAAGAAACCCAAGAGGCTTCCTAGAGCAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTATCTACAGCTATAAAGATTTAAAGTCTGCAACAAAAAGTTTTAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATATAAGGGCACTCTGAAAAATGGTAAAGTAGTTGCAGTCAAGAAATTAATTTTACGCCAATCCAGCAAGATGGATGAACAATTTGAAAGTGAAGTCAAGCTTATAAGTAATGTTCATCATAGGAATCTAGTGAGACTCCTTGGATGTTGCAGTAAAGGTCAAGAGAGAATCCTTGTCTATGAATACATGGCAAACAGCAGCCTGGACAGATTCTTATTTGGTGAAAAGAAAGGTTCTCTCAACTGGAAACAACGGTATGATATAATTTTAGGCACAGCAAGGGGTCTAGCCTATCTACATGAGGATTTCCATGTTTGCATCATACACAGAGATATAAAGACTAACAATATCCTTTTAGATGATGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCAAGACTTTTACCAGAGGACCAATCTCATCTTAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGCTATCAGAGAAAGCTGATACCTATAGCTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGTAGTGAATTGAGGGTTGATACTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTGTATGAGGGAGGTATGCACTTGGAGTTGGTTGACAAGACATTGAACCCTGATGACTATGATGCAGAAGAAGTGAAGAAAGTTATAGAGATTGCTTTGTTGTGCACTCAAGCATCAGCAGCTGCAAGGCCAACAATGTCTGAAATAGTAGTACTACTCAAAAGCAAGAACTTATTGGAGCATATGAAGCCATCCATGCCTGTCTTTGTTGAATCTAATGTTAGGCCTCGGACAGACACCTCTACCTCAACTGGTTCTTCTACCTCTAATGCTACTGCTTCTACTTCTATACTATCAGCTCGATGA 1941 0.424 MLQHKLLALTLFMLLWSWRNFHGALADPQIRLLNKGCSQYNATDLSNFNQNLNATLANLKAQVNNQSKHFATAQEARGADPVYALFQCRNYLSNADCAACFTAAAAQIRNCSAGANGARVIYDGCFLRYESNGFFDQTTLPGNSMICGNRTANGATAFSTSAQQVLMDLQTATPKIPGFFAATKTPVASGAIYAIAQCAETVTESGCLDCLTVGYNNIESCFPNTDGRAFDAGCFMRYSETSFFADNQTIDITPFLKQGGSSKKGAIIGGVVGGVALFFIILALFVWLRRYKKPKRLPRAGDILGATELKGPVIYSYKDLKSATKSFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLILRQSSKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGEKKGSLNWKQRYDIILGTARGLAYLHEDFHVCIIHRDIKTNNILLDDDLQPRIADFGLARLLPEDQSHLSTKFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIISGQKSSELRVDTDGEFLLQRAWKLYEGGMHLELVDKTLNPDDYDAEEVKKVIEIALLCTQASAAARPTMSEIVVLLKSKNLLEHMKPSMPVFVESNVRPRTDTSTSTGSSTSNATASTSILSAR. 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01809 646 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Seca5g01809 646 ProSiteProfiles Gnk2-homologous domain profile. 140 243 IPR002902 -
Seca5g01809 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 634 - -
Seca5g01809 646 Gene3D Phosphorylase Kinase; domain 1 305 403 - -
Seca5g01809 646 FunFam Cysteine-rich receptor-like protein kinase 2 142 243 - -
Seca5g01809 646 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01809 646 Coils Coil 49 76 - -
Seca5g01809 646 Gene3D Transferase(Phosphotransferase) domain 1 404 611 - -
Seca5g01809 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Seca5g01809 646 FunFam Cysteine-rich receptor-like protein kinase 2 292 403 - -
Seca5g01809 646 Pfam Salt stress response/antifungal 37 131 IPR002902 -
Seca5g01809 646 Pfam Salt stress response/antifungal 151 240 IPR002902 -
Seca5g01809 646 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672|GO:0006468
Seca5g01809 646 FunFam Cysteine-rich receptor-like protein kinase 2 29 134 - -
Seca5g01809 646 MobiDBLite consensus disorder prediction 618 646 - -
Seca5g01809 646 MobiDBLite consensus disorder prediction 619 646 - -
Seca5g01809 646 SMART serkin_6 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01809 646 SUPERFAMILY Protein kinase-like (PK-like) 311 628 IPR011009 -
Seca5g01809 646 CDD STKc_IRAK 333 599 - -
Seca5g01809 646 FunFam Cysteine-rich receptor-like protein kinase 2 404 606 - -
Seca5g01809 646 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Seca5g01809 646 Gene3D - 143 243 IPR038408 -
Seca5g01809 646 Gene3D - 29 134 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01809 Seca-Chr5 52688903 52694862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01809 7 646 Receptor kinase-like Gene Family AT1G70520 37.077 1.99e-129 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g01809 PK_Tyr_Ser-Thr 5.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01809 - - gmx:100813585 1043.88