Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01807 ATGCAGCAACTTATTAAGGTACTAGTGGCCTTATTGATGTTGTGGAGTGGTGCAGTAGTTGCAGCCCCACAGACTACTATTCTACTGAACCAGGGGTGCAGCACATACAACGCATCCAACTTGCGTAGCTTCTTTGCTAACATCAACGAAACGTTTTCAGAGATGAGAGCAGAGGTTAGCAATCAAAGCAAGCACTTTGCCACAGCACAACAAGCCAGGGGGGAGGTAATCACATATTCTATGTTTCAATGCAGAAATTACCTCTCCAAAAATGACTGTCTTGCTTGCTTCAACACCGCAAGTACCCAAATCCGCAACTGTTCCGCTGGCAACGGCGCCAGAGTCATCTACGATGGCTGCTTCCTCAGGAGGTATGAGAGTGAGAGGTTCTACGATCAAACCAATCAACCTGGCGCTGGTGTATCATGTGGGAACAAGACTGCCAAGGGAGCCTCTGCTTTTACAACAGTTGGACAACAAGTGTTACTAGACCTCCAAGCAGCAACACCCAAAATTAAAGGCTTTTATGCAGCTACAAAGACACAAGTGGTTGGTGGTGGTGCAATTTATGCCATTGCACAATGTGTTGAAACTGCCACAGAGAGTACTTGTCTCAATTGCATGACAGTTGGTTACAACAATTTGCAGACTTGTCTTCCTAATACAGATGGTAGAGCATTTGATGCTGGGTGTTTTATGAGATACTCAGAGACACCTTTCTTTGCTGATAACCAGACCATTGATATCACTCCCTATTTAAAACAAGGAGGTTCAAGCAAGAAATGGGCCATTATAGGTGGTGTTGTTGGAGGTGTAGGTCTTCTTGTGATCCTTCTTGCAATTTTTGCCTGGCAAAGATCCAGAAAACCCAAGAGGGCTCCTAGAGGCAATATAACAGGTGATATATTGGGAGCAACCGAGTTGAAAGGTCCAGTAAACTACAAGTATAGCGATCTGAAAGCTGCAACAAAGAATTTTAATAATGAAAATAAACTAGGAGAAGGAGGCTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTAGTTGCAGTGAAGAAATTAGTGTTGGGGAAATCCAGCAAGATGGAGGATGATTTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCATCGGAATCTAGTTAGACTTCTTGGTTGTTGTAGTAAAGGCCAAGAGAGAATCCTAGTTTATGAATACATGGCAAATAGCAGCCTTGACAAATTCCTATTTGGTAACAAAAAGGGTTCCCTCAACTGGAAACAACGCTATGATATAATTTTAGGCACAGCTAGGGGATTGGCCTACCTACATGAGGAATTCCATATTTCCATTATACATAGAGATATTAAGACTGGTAATATCCTCCTAGATGATAATCTTCAGCCTAAAATTGCTGATTTTGGATTGGCAAGACTTTTGCCAGAGGATCGTTCTCATCTAAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAAAAGGCTGATGCCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGAAGTGAAGGTTGATGATGATGTTCATGAATACCTTCTTCAACGAGCATGGAAATTGCATGAGAGAGGCATGCATTTGGAGCTGGTAGACAAGGCCTTAGACCCTAATGACTATAATGGAGAAGAAGTGAAGAAAACCATAGAGATTGCTTTATTATGCACTCAAGCATCAGCTACAACAAGGCCAACAATGTCTGAAGTAGTAGTCTTACTCCAAAGCAAGAACTTGCTGGAGCACCTGCATCCAACTATGCCTGTGTTTGTTGAAACGAATCTCAAGGCTCGAGAAGGCCATTCTTCATCAACTGGCACTGCTTCTTCTACATCCAATGCTACTGCCTCCGTTTCTATTCCATCAGCCCGATGA 1947 0.4237 MQQLIKVLVALLMLWSGAVVAAPQTTILLNQGCSTYNASNLRSFFANINETFSEMRAEVSNQSKHFATAQQARGEVITYSMFQCRNYLSKNDCLACFNTASTQIRNCSAGNGARVIYDGCFLRRYESERFYDQTNQPGAGVSCGNKTAKGASAFTTVGQQVLLDLQAATPKIKGFYAATKTQVVGGGAIYAIAQCVETATESTCLNCMTVGYNNLQTCLPNTDGRAFDAGCFMRYSETPFFADNQTIDITPYLKQGGSSKKWAIIGGVVGGVGLLVILLAIFAWQRSRKPKRAPRGNITGDILGATELKGPVNYKYSDLKAATKNFNNENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSKMEDDFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHISIIHRDIKTGNILLDDNLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSYGIVVLEIISGQKSTEVKVDDDVHEYLLQRAWKLHERGMHLELVDKALDPNDYNGEEVKKTIEIALLCTQASATTRPTMSEVVVLLQSKNLLEHLHPTMPVFVETNLKAREGHSSSTGTASSTSNATASVSIPSAR. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01807 648 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
Seca5g01807 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 79 638 - -
Seca5g01807 648 Gene3D Phosphorylase Kinase; domain 1 302 402 - -
Seca5g01807 648 SMART serkin_6 326 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01807 648 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Seca5g01807 648 FunFam Cysteine-rich receptor-like protein kinase 2 25 130 - -
Seca5g01807 648 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Seca5g01807 648 ProSiteProfiles Protein kinase domain profile. 326 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01807 648 MobiDBLite consensus disorder prediction 624 648 - -
Seca5g01807 648 Pfam Protein tyrosine and serine/threonine kinase 328 596 IPR001245 GO:0004672|GO:0006468
Seca5g01807 648 SUPERFAMILY Protein kinase-like (PK-like) 311 613 IPR011009 -
Seca5g01807 648 CDD STKc_IRAK 332 599 - -
Seca5g01807 648 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Seca5g01807 648 Pfam Salt stress response/antifungal 33 123 IPR002902 -
Seca5g01807 648 Pfam Salt stress response/antifungal 143 237 IPR002902 -
Seca5g01807 648 FunFam Cysteine-rich receptor-like protein kinase 2 403 606 - -
Seca5g01807 648 FunFam Cysteine-rich receptor-like protein kinase 2 138 240 - -
Seca5g01807 648 Gene3D - 139 240 IPR038408 -
Seca5g01807 648 Gene3D - 25 130 IPR038408 -
Seca5g01807 648 FunFam Cysteine-rich receptor-like protein kinase 2 289 402 - -
Seca5g01807 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01807 Seca-Chr5 52666413 52671566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01807 33 641 Receptor kinase-like Gene Family AT1G70520 36.613 8.64e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g01807 PK_Tyr_Ser-Thr 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01807 - - vun:114187094 959.518