Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01806 ATGCTGCAACTTAAGCTTCTAGCCTTAACCCTGTTCATGTTGTGGTCATGTCACTGTGCACTAGGAGACCCTCAAATCCGTTTACTGAACAAGGGTTGCAGCCAATACAACGCAACTAACTTGAGAAGCTTCTACCAAAATCTAAACGCAACTTTGGCAGACTTGAAAGCACAAGTGAGCAACCAAAGCAAGCACTTTGCCACAGCACAACAAGCCAGGGGAGCAGACCCTGTTTATGCTATGTTTCAATGTAGGAATTACCTCTCCAACGCTGACTGTGCCGCCTGCTTCACTACCGCCGCTGCACAAATCCGCAACTGCTCCGCCGGAGCCAATGGTGCCCGTGTCATTTATGATGGTTGCTTACTTAGGTACGAGAGCAATGGCTTAATCTTCAACCAAACTACTCTGCCTGGAAATAGTATGATTTGTGGAAATGAAACTACAAAAGAAGCCACCGCTTTTGGTGCAAGTGCACAACAAGTGCTAATGGATCTACAAATAGCAACACCCAAAATTACTGGTTTCTTTGCAGCTACCAAGACACCAGTGGCTAATGGTTCAATCTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAAAGTGGTTGTTTGGATTGTTTAACAGTTGGATACAACAACATAAAAAGTTGTTTTCCTAATACAGATGGTAGAGCATATGATGCTGGGTGTTTTATGAGATACTCAGACACATCATTCTTTGCTGACAACCAGACCATTGACATCACACCCTTATTAAAACAAGGTAGAATTAAGCATGCAGATGTAGGGGGTTCAAGCAAGAAGGGGGCCATTATTGGGGGTGTTGTTGGAGGTGTAGGTCTTGTTGTGATCCTTCTTGCATTATTTGTTTGGCTTAAGCAATACAAGAAACCAAAGAGAATTCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAGAGGTCCAGTTATCTACAGCTATAAAGATTTAAAGTCTGCAACAAAAAATTTTAGTGATGAAAATAAACTAGGAGAAGGAGGATTTGGAGATGTATATAAGGGCACTCTGAAAAATGGTAAAATTGTGGCAGTCAAGAAATTAATTTTAGGCCAATCCAGTAAGATGGATGAACACTTTGAAAGTGAAGTCAAGCTCATAAGCAATGTTCATCATAGGAATCTAGTTCGACTTCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAGCAGCCTTGATAGATTCTTATTTGGTGAAAAGAAAGGTTCTCTCAATTGGAAATACCGATATGACATAATTTTAGGCACAGCAAGGGGTTTAGCCTATTTACATGAGGATTTCCATGTTTGCATCATACATAGAGATATAAAGACTGGCAATATCCTCTTGGATGATGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCAAGACTTTTACCACAGGACCAATCTCATGTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGCTATCAGAGAAGGCTGATACCTACAGCTTTGGTGTTGTAGTCCTAGAAATTGTAAGTGGCCAAAAAAGCAGTGAAATGAGGGCTGATGCTGATGGGGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAGATATGCACTTGGAGTTGGTTGACAAGACATTGAATGTTGAAGAATATGATGCAGAAGAAGTGAAGAAAATTATAGAAATTGCTTTATTGTGCACTCAAGCATCGGCTGCTGCAAGGCCAACAATGTCTGAAATAGTAGTACTACTCAAAAGCAAGAACCTATTGGAGCATATGAAGCCATCCATGCCTGTCTTTGTTGAATCTAATGTTAGGCCCCGGACAGACACCTCTACCTCAACTGCTTCATCTACATCTAATGCTACTGCTTCCACTTCTATATTATCGGCTCGATGA 1953 0.4142 MLQLKLLALTLFMLWSCHCALGDPQIRLLNKGCSQYNATNLRSFYQNLNATLADLKAQVSNQSKHFATAQQARGADPVYAMFQCRNYLSNADCAACFTTAAAQIRNCSAGANGARVIYDGCLLRYESNGLIFNQTTLPGNSMICGNETTKEATAFGASAQQVLMDLQIATPKITGFFAATKTPVANGSIYAIAQCAETVSESGCLDCLTVGYNNIKSCFPNTDGRAYDAGCFMRYSDTSFFADNQTIDITPLLKQGRIKHADVGGSSKKGAIIGGVVGGVGLVVILLALFVWLKQYKKPKRIPRGDILGATELRGPVIYSYKDLKSATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSSKMDEHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGEKKGSLNWKYRYDIILGTARGLAYLHEDFHVCIIHRDIKTGNILLDDDLQPRIADFGLARLLPQDQSHVSTKFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIVSGQKSSEMRADADGEFLLQRAWKLYEEDMHLELVDKTLNVEEYDAEEVKKIIEIALLCTQASAAARPTMSEIVVLLKSKNLLEHMKPSMPVFVESNVRPRTDTSTSTASSTSNATASTSILSAR. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01806 650 Gene3D Phosphorylase Kinase; domain 1 308 407 - -
Seca5g01806 650 Coils Coil 45 65 - -
Seca5g01806 650 Gene3D Transferase(Phosphotransferase) domain 1 408 615 - -
Seca5g01806 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 79 639 - -
Seca5g01806 650 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Seca5g01806 650 FunFam Cysteine-rich receptor-like protein kinase 2 408 610 - -
Seca5g01806 650 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Seca5g01806 650 FunFam Cysteine-rich receptor-like protein kinase 2 25 130 - -
Seca5g01806 650 CDD STKc_IRAK 337 603 - -
Seca5g01806 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Seca5g01806 650 FunFam Cysteine-rich receptor-like protein kinase 2 139 240 - -
Seca5g01806 650 Pfam Protein kinase domain 332 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01806 650 SUPERFAMILY Protein kinase-like (PK-like) 315 633 IPR011009 -
Seca5g01806 650 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Seca5g01806 650 Pfam Salt stress response/antifungal 144 237 IPR002902 -
Seca5g01806 650 MobiDBLite consensus disorder prediction 622 650 - -
Seca5g01806 650 SMART serkin_6 331 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01806 650 ProSiteProfiles Protein kinase domain profile. 331 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01806 650 MobiDBLite consensus disorder prediction 623 650 - -
Seca5g01806 650 FunFam Cysteine-rich receptor-like protein kinase 2 296 407 - -
Seca5g01806 650 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Seca5g01806 650 Gene3D - 25 129 IPR038408 -
Seca5g01806 650 Gene3D - 140 240 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01806 Seca-Chr5 52632732 52638817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01806 1 650 Receptor kinase-like Gene Family AT1G70520 37.216 6.17e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g01806 Pkinase 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01806 - - gmx:100813585 1013.45