LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g01805	ATGAAGCTTTCAACATCAGGGTTGGGTCAGGAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCTTGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTAGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCTACAACTAACAGAGAAGTTGATGGGCACATACCCAATTACCCCAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATCCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCTCAACAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTAGACATATTTTTCGGGGGCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGAGCCAACCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGAATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGATACATGGGTACAATAACTGGCATAAGTGATCTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTATTTCCCCTCAGATTGAAACGACCATGGCATCCTGGCACCTCATCTATGCATGATGGCAGAGATGAAACAACTAATGGACTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTTAATTCCCTAAATTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACCTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAGGCCACAAATAATGAATTTTCAACAACCTTTCCATTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGTACTGACAGAGAACCTGTCTCAGCACCTACTTCAGAAATCACATAACAATCAAGAAGTCCAACCACAACAGCAGCAACATACTTATCAAGATACACTTCTAATTCAAAGTGAACAGCTCCATCAGATACAACACACCAGTGTGCCTTCACCATCATATTCCAAACAAGATTTCTTGGATTCAAGCATAAAGTCCCCCGCTTCAGTTCCCCCTGAACAAAACATGCTTAGTTCACTTTGTCATGAAGGAAGTGGGAGTCTCTTGAATTTATCCAGAAGCGGTCAGTCCTTGCTGGCTGAACAGTTACCCCAACAGCCATGGACTGCAAAGTATGCTCCTGAGCAGGTCAATACCTTCAGCAGCATAGTGTCACACGCACAATATTCTGGAAAAGATTCTGCTGTGGTGCCACCACATTGTAATTCAGATGCCCAAAATTCTACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTACTCCCTACCACTGTTCCTGGTTACACCACTTCATCAGCTGATACTGATGCATCAACAATGCCATTAGGGGAGTCTGGATTCCAGAGTTCTTTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAGAGTGAAGGGCAAGTTGATCCTCAAAACCAGACTCGAACATTTGTCAAGGTTTACAAATCAGGGTCAGTGGGGCGCTCGCTTGACATCTCCAGGTTCAGCAGCTACCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTACAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCGGTGGAATCGCTTGCTCAAAGTTCGGGACAAAGGCTAAATGGCACTGCTGTGGAGTCTCACCACATTGTCTCTGGACCACCATCAATTGGCTCCCTTGAATACTAA	2532	0.4483	MKLSTSGLGQEGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSMHDGRDETTNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMRPQIMNFQQPFHYLQQSGNSNSPLQLQQQQAIQQSVSSNMLQPQAQVLTENLSQHLLQKSHNNQEVQPQQQQHTYQDTLLIQSEQLHQIQHTSVPSPSYSKQDFLDSSIKSPASVPPEQNMLSSLCHEGSGSLLNLSRSGQSLLAEQLPQQPWTAKYAPEQVNTFSSIVSHAQYSGKDSAVVPPHCNSDAQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTDASTMPLGESGFQSSLYACMQDSSELLQSEGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLQDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLAQSSGQRLNGTAVESHHIVSGPPSIGSLEY.	844

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g01805	843	FunFam	Auxin response factor	126	230	-	-
	Seca5g01805	843	SMART	B3_2	128	230	IPR003340	GO:0003677
	Seca5g01805	843	Pfam	AUX/IAA family	707	801	IPR033389	-
	Seca5g01805	843	MobiDBLite	consensus disorder prediction	546	574	-	-
	Seca5g01805	843	SUPERFAMILY	CAD & PB1 domains	712	791	-	-
	Seca5g01805	843	Gene3D	-	126	229	IPR015300	-
	Seca5g01805	843	SUPERFAMILY	DNA-binding pseudobarrel domain	112	257	IPR015300	-
	Seca5g01805	843	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	17	806	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Seca5g01805	843	Pfam	B3 DNA binding domain	128	229	IPR003340	GO:0003677
	Seca5g01805	843	FunFam	Auxin response factor	712	806	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g01805	Seca-Chr5	52557014	52571547	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g01805	98	809	B3 DNA Binding Superfamily	AT5G37020	68.837	0.0	932

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Seca5g01805		AUX_IAA	4.1e-08	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g01805	-		-	gmx:100784373	1526.92

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