Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01805 ATGAAGCTTTCAACATCAGGGTTGGGTCAGGAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCTTGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTAGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCTACAACTAACAGAGAAGTTGATGGGCACATACCCAATTACCCCAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATCCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCTCAACAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTAGACATATTTTTCGGGGGCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGAGCCAACCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGAATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGATACATGGGTACAATAACTGGCATAAGTGATCTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTATTTCCCCTCAGATTGAAACGACCATGGCATCCTGGCACCTCATCTATGCATGATGGCAGAGATGAAACAACTAATGGACTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTTAATTCCCTAAATTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACCTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAGGCCACAAATAATGAATTTTCAACAACCTTTCCATTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGTACTGACAGAGAACCTGTCTCAGCACCTACTTCAGAAATCACATAACAATCAAGAAGTCCAACCACAACAGCAGCAACATACTTATCAAGATACACTTCTAATTCAAAGTGAACAGCTCCATCAGATACAACACACCAGTGTGCCTTCACCATCATATTCCAAACAAGATTTCTTGGATTCAAGCATAAAGTCCCCCGCTTCAGTTCCCCCTGAACAAAACATGCTTAGTTCACTTTGTCATGAAGGAAGTGGGAGTCTCTTGAATTTATCCAGAAGCGGTCAGTCCTTGCTGGCTGAACAGTTACCCCAACAGCCATGGACTGCAAAGTATGCTCCTGAGCAGGTCAATACCTTCAGCAGCATAGTGTCACACGCACAATATTCTGGAAAAGATTCTGCTGTGGTGCCACCACATTGTAATTCAGATGCCCAAAATTCTACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTACTCCCTACCACTGTTCCTGGTTACACCACTTCATCAGCTGATACTGATGCATCAACAATGCCATTAGGGGAGTCTGGATTCCAGAGTTCTTTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAGAGTGAAGGGCAAGTTGATCCTCAAAACCAGACTCGAACATTTGTCAAGGTTTACAAATCAGGGTCAGTGGGGCGCTCGCTTGACATCTCCAGGTTCAGCAGCTACCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTACAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCGGTGGAATCGCTTGCTCAAAGTTCGGGACAAAGGCTAAATGGCACTGCTGTGGAGTCTCACCACATTGTCTCTGGACCACCATCAATTGGCTCCCTTGAATACTAA 2532 0.4483 MKLSTSGLGQEGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSMHDGRDETTNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMRPQIMNFQQPFHYLQQSGNSNSPLQLQQQQAIQQSVSSNMLQPQAQVLTENLSQHLLQKSHNNQEVQPQQQQHTYQDTLLIQSEQLHQIQHTSVPSPSYSKQDFLDSSIKSPASVPPEQNMLSSLCHEGSGSLLNLSRSGQSLLAEQLPQQPWTAKYAPEQVNTFSSIVSHAQYSGKDSAVVPPHCNSDAQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTDASTMPLGESGFQSSLYACMQDSSELLQSEGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLQDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLAQSSGQRLNGTAVESHHIVSGPPSIGSLEY. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01805 843 FunFam Auxin response factor 126 230 - -
Seca5g01805 843 SMART B3_2 128 230 IPR003340 GO:0003677
Seca5g01805 843 Pfam AUX/IAA family 707 801 IPR033389 -
Seca5g01805 843 MobiDBLite consensus disorder prediction 546 574 - -
Seca5g01805 843 SUPERFAMILY CAD & PB1 domains 712 791 - -
Seca5g01805 843 Gene3D - 126 229 IPR015300 -
Seca5g01805 843 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Seca5g01805 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca5g01805 843 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Seca5g01805 843 FunFam Auxin response factor 712 806 - -
Seca5g01805 843 Gene3D - 292 364 - -
Seca5g01805 843 CDD B3_DNA 127 228 IPR003340 GO:0003677
Seca5g01805 843 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Seca5g01805 843 Gene3D - 713 806 - -
Seca5g01805 843 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca5g01805 843 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Seca5g01805 843 MobiDBLite consensus disorder prediction 824 843 - -
Seca5g01805 843 FunFam Auxin response factor 292 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01805 Seca-Chr5 52557014 52571547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01805 98 809 B3 DNA Binding Superfamily AT5G37020 68.837 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca5g01805 AUX_IAA 4.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01805 - - gmx:100784373 1526.92