Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01795 ATGGTTAAGTGGTTGAAGATTAAGGTCATTGGAAGTGGCAGCTATGGCACCGTTTACGAAGCTATCAATTCTTCACCAGAAAAAGATTCTCTAAAGTCAATAGCTATAAAGAGTGCACCACTTAGCAAGCCCTATGAATTGCATAGAGAAGGGCAGATTCTAAACTCTTTCCTTTGTGCTCCAGAAATTGTTCAATCCCACGGCAGTAATGTCACCATGGAGGATGGCAAGTGGGTCTACAATCTCCACTTGGAGTATGCCCCTTTTGGCACTCTTACCGACATGATCAAGAAAGGGCGTTTCTTGGAGAGCAGGACAACAAAAGTCTACATGAACATGCTCCTACAAGGACTTTCTCGCATCCACAAAAAAGGATTTGTGCATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCACCACATTGGTCTCATGATAGCAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTAAGACTCCTGAGGAGAAGGAAAAAGATTCTCTAAAGTCAATAGCTATAAAGAGTGCACCACTTAGCAAGTCCTATGAATTGCATAGAGAATGGCAGATTCTAAACTCTTTCCTTTGTGCTCCAGAAATTGTTCAATCCCACGGCAGCAATGTCACTATGGAGGATGGCAAGTGGGTCTACAATCTCCACTTGGAGTATGCCCCTTTTGGCACTCTTACCGACATGATCAAGAAAGGGCGTTTCTTGGAGAGCAGGACAACAAAAGTCTACATGAACATGCTCCTACAAGGACTTTCTCGCATCCACAAAAAAGGATTTGTGCATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCACCACATTGGTCTCATGATAGCAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTAAGACTCCTGAGGAGAAGGTGAACCAAGAAGATTGGAAGTGGAGGTGTAGAGGGACTCCTTTGTTCATGTCACCCGAATCAATTTCATGTGGCCAAATTGAAGCACCTTTGGACATATGGTCTTTTGGGTGCATAGTTCTTGAGATGCTCACCGGATACCCTGCATGGAGGGATGGGATGAAAACTGAAGAGGACGTAATGCTTAAGGTTGGCATTATGAAAAAAGCACCAGAGATTCCACTTGGACTGAGTGATGGATGCATTGACTTTTTAAACAAGTGTTTTGCACTAGACCCAAGTCAAAGATGGACCGCTGAAAAGCTTATGTATCATCATTATCTTCTTTTGGATTTGGATTGGCTTGTTTAG 1269 0.424 MVKWLKIKVIGSGSYGTVYEAINSSPEKDSLKSIAIKSAPLSKPYELHREGQILNSFLCAPEIVQSHGSNVTMEDGKWVYNLHLEYAPFGTLTDMIKKGRFLESRTTKVYMNMLLQGLSRIHKKGFVHCDLKPDNILVFPPHWSHDSRYYQLKIADFGLAKTPEEKEKDSLKSIAIKSAPLSKSYELHREWQILNSFLCAPEIVQSHGSNVTMEDGKWVYNLHLEYAPFGTLTDMIKKGRFLESRTTKVYMNMLLQGLSRIHKKGFVHCDLKPDNILVFPPHWSHDSRYYQLKIADFGLAKTPEEKVNQEDWKWRCRGTPLFMSPESISCGQIEAPLDIWSFGCIVLEMLTGYPAWRDGMKTEEDVMLKVGIMKKAPEIPLGLSDGCIDFLNKCFALDPSQRWTAEKLMYHHYLLLDLDWLV. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01795 422 Gene3D Transferase(Phosphotransferase) domain 1 2 170 - -
Seca5g01795 422 Pfam Protein kinase domain 169 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01795 422 Pfam Protein kinase domain 6 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01795 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Seca5g01795 422 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Seca5g01795 422 CDD PKc 10 161 - -
Seca5g01795 422 Gene3D Transferase(Phosphotransferase) domain 1 171 421 - -
Seca5g01795 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Seca5g01795 422 SMART serkin_6 4 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01795 422 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 172 414 - -
Seca5g01795 422 SUPERFAMILY Protein kinase-like (PK-like) 4 164 IPR011009 -
Seca5g01795 422 SUPERFAMILY Protein kinase-like (PK-like) 172 415 IPR011009 -
Seca5g01795 422 ProSiteProfiles Protein kinase domain profile. 4 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01795 Seca-Chr5 52412085 52417382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01795 159 417 MAP Kinase Kinase Kinase AT4G36950 38.783 5.69e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca5g01795 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01795 - - gmx:102667952 232.646