Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01791 ATGGCGAAGAGGGAGACGGTGGTGCCCGAACTAGAACCGCCGGACGACCTCCGATGCCGGCGGAGTGACGGCAAGTCGTGGCGGTGCCGTCATTGGAGGATTCACGATGAAAACTACTGTGAGGAGCATTTCTTATACTACAGGGCAAGGTCTTTTCACCCTATCAAACAAAGGAAATCCACCGTTTCTGCTTCTGCTTCAGCTTCCGCGCCAAATGACGATGATGATGAAGAAGAAGACGAGCGAACTGTTCACCGGAGTAGCAATGCCAAGCCCCAAGCACACCGGAAGAAGAGCTCGAAGAGGCTTCGAGAAGAGGAAATGACTGTTTCGGAGGAGAAAACTCAGAAAACCAAAAACAAGAAGGTGGAAATCAAAGCGGAACGAGAATGGCCGAATCTGAAGGAGGAAAAATCTGACGGAACGGTGCTACTGGACAGGAAAGCCAGGGTTAGAGAGAAGATCAAGAAAACGCGTCAATTGGTTGATGATGAACCAGAACCAGCCACGAGGAGAAGGTCTTCTTCCACCAAAAATGAAAAACCTAGTGGCCCTGGAATGTGTCATCAATGCCAGAGAAATGATAAGAGAGTTGTTTGCTGCAAAAAATGCAACGCCAAACGCTTTTGTGTCCCCTGTATTCAGAGATGGTATCCGCAAATGTCGGAGGAGGCTATAGCAGAATCTTGTCCATATTGTCAAGGCAATTGTAACTGCAAGGCATGTTTACGTAGAAAAGATAAAATTACGGATCCTGGAGATTTAGGAATGCCTCTAAATCAAGATGAAAAGATTCAACATCTGAAGCATTTGATACAATCATTGTATCCTTTCCTGGAGCAATTTAATCATGCACAGCGGTTGGAAATGGAGATCGAAGCAAAAATTAGAGGGTTATTGCTTTCAGATTTAGAAGTAAACCAGATTGATTGTTCCCAATATGAACGTATTTATTGCAACAATTGCAAAACTTCTATAATCGATTTTCACAGGAGCTGCCCAAATTGTTCATATGATCTTTGCCTTACTTGTTGCCGGGAAATTCGTTGCTATTTCTTGCAAGAGGAAATCGCCGAGCAATATACTGATGTTTCTAATGCTCACTTGCATAGTGGAGAGCCTTTAGATCTGCAGTCATACAAGAAAGAATCATCAGACGTTTGTCTTCAGTCAAGCTCTAAGAACTCTGAGAGACCCAAGCCCAAGCATGTATGGAGGGCAATGAAAAATGGTGCCATTCCCTGTCCACCAAAGGATAAAGATGGTTGTGGACATGAATGTCTTGAGCTGAAGTGCATATTTTCACAAAATTGGGTTTCAGAATTAAACGAAAAAGTGAAAAGATTAGTCGAAGTGCATGGGCTTGAAGATATGCCTGCAGTCTCTGCACAGTGTACTTCTTGCTTCAAATCACATGGTGACATTGACTCCATCAACAAGAAGTTACGAAAATCTGCCTCTCGAGAAGACTCGAGTGACAACTATTTGTATTGTCCTTCAGCTAGTGATGTTAAATGTGGGGATCTGGAACATTTCCAGGGCCATTGGATTAAGGGAGAACCGGTTATTGTTAGGAATGCTCTTGAGTTAACATCTGGCTTGAGCTGGGAGCCAATGGTAATGTGGCGTGCCATGCGTCAATTGACTTATCATGGTTCCAATCATTTGAATGTGAAAGCAATTGACTGCCTAGATTGGTGTGAGGTTAAAATAAACATCCATAAATTTTTGAAGGGATACTCAGAGGGTCGTGCTCATGGTAACTCATGGCCTGAGATGCTCAAGCTCAAAGATTGGCCACCGTCTAATTCATTTGAGCAGAAGTTACCCCGTCATGGTATGGAGTTTATCAGTGCCTTACCCTACAAAGAGTATACACATCCTCACTCTGGTTTTCTTAACATGGCCACAAAGCTGCCAAAGAAATCTTTAAAACCTGACTTGGGGCCTAAGACATATATAGCTTATGGGTTTGCTGAAGAGCTTGGACGTGGAGATTCTGTGACCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATCCTGATGCATGTTGAGGAAGTGACCCTCACTTTTCAACATAGCACTAAAATAAAGAAGTTGAAACAACAGTACGCTGATGAAGATAAAAGTGAACTTTTTCAGGAAGAAAATAGTGTGGCTAAGTGTAAATCAACATCAGAAGAAAATACTTCATTGTTGGCTGTAGATGCTTTGTCAATTATCAAAGGGTCTTCCCTCATCCAAATGTCAAAAATGGAAAATGATGGGTCCTGCAGAAAGCATGCAACTGCTGAAACACCAAAGGATAGCATTTTTGACAAAAGTGGTGAGATTGTGGCTTTTGCTGGGCAACCAGATTCTTCTACCTCTGGAGTTGAAGTTCTAGTAGGTGCTCAAGCTGGATTGCATAAGAATAATATAAATTCTTCAAATGCAGTAACTGCTACCAGTGAGGAAGATCTTATGAAGGAAGAAGAGCAGGATGTCATTACTTACAAAATAAGAGAAAATTCAGGAATTTCATTGGAAAAGGAAGTTTCAGAAGGGAATGTAACTGTTGGGAGGGGAAAGGTAGTCAAATCACCACATGATTTAGATAAGTCAGAATTATGTGCCATGGGTAATGAGTTTCAAATAGAAAACAAGGGAGGAGCTGTCTGGGATATTTTTAGGAGACAAGATGTGCACAAGCTCGAGGAATACCTTAGAAAGCATCGTAAGGAATTCAGGCATATCCGTTGTTCTCAAGTGGAGGAGGTTTCTCATCCCATTCATGATCAAGTTTTTTATCTTAATTCTCATCATAAAAGGAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCTGTCTTTATACCTGCTGGGTGTCCCCATCAAGTTAGAAATTTACAGTCATGCATAAAGGTTGCTCTGGATTTTGTCTCTCCTGAAAATATCTCAGAGTGTGTTCGTCTAACTGAGGAGTTTCGCTCTCTTCCCCCAAACCATAGAGCAAAGGAAGATAAACTTGGGGTGAAGAAAATGTGTCTTTGGGCATTGAGCCAGGCTGCAGATGATTTAGAGAAAAGCTCAGAAGATGGGTAG 3111 0.4214 MAKRETVVPELEPPDDLRCRRSDGKSWRCRHWRIHDENYCEEHFLYYRARSFHPIKQRKSTVSASASASAPNDDDDEEEDERTVHRSSNAKPQAHRKKSSKRLREEEMTVSEEKTQKTKNKKVEIKAEREWPNLKEEKSDGTVLLDRKARVREKIKKTRQLVDDEPEPATRRRSSSTKNEKPSGPGMCHQCQRNDKRVVCCKKCNAKRFCVPCIQRWYPQMSEEAIAESCPYCQGNCNCKACLRRKDKITDPGDLGMPLNQDEKIQHLKHLIQSLYPFLEQFNHAQRLEMEIEAKIRGLLLSDLEVNQIDCSQYERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCREIRCYFLQEEIAEQYTDVSNAHLHSGEPLDLQSYKKESSDVCLQSSSKNSERPKPKHVWRAMKNGAIPCPPKDKDGCGHECLELKCIFSQNWVSELNEKVKRLVEVHGLEDMPAVSAQCTSCFKSHGDIDSINKKLRKSASREDSSDNYLYCPSASDVKCGDLEHFQGHWIKGEPVIVRNALELTSGLSWEPMVMWRAMRQLTYHGSNHLNVKAIDCLDWCEVKINIHKFLKGYSEGRAHGNSWPEMLKLKDWPPSNSFEQKLPRHGMEFISALPYKEYTHPHSGFLNMATKLPKKSLKPDLGPKTYIAYGFAEELGRGDSVTKLHCDMSDAVNILMHVEEVTLTFQHSTKIKKLKQQYADEDKSELFQEENSVAKCKSTSEENTSLLAVDALSIIKGSSLIQMSKMENDGSCRKHATAETPKDSIFDKSGEIVAFAGQPDSSTSGVEVLVGAQAGLHKNNINSSNAVTATSEEDLMKEEEQDVITYKIRENSGISLEKEVSEGNVTVGRGKVVKSPHDLDKSELCAMGNEFQIENKGGAVWDIFRRQDVHKLEEYLRKHRKEFRHIRCSQVEEVSHPIHDQVFYLNSHHKRKLKEEFGVEPWTFIQNLGEAVFIPAGCPHQVRNLQSCIKVALDFVSPENISECVRLTEEFRSLPPNHRAKEDKLGVKKMCLWALSQAADDLEKSSEDG. 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01791 1036 MobiDBLite consensus disorder prediction 58 124 - -
Seca5g01791 1036 ProSiteProfiles WRC domain profile. 13 58 IPR014977 -
Seca5g01791 1036 SMART cupin_9 609 999 IPR003347 -
Seca5g01791 1036 ProSiteProfiles Zinc finger RING-type profile. 188 234 IPR001841 -
Seca5g01791 1036 MobiDBLite consensus disorder prediction 99 124 - -
Seca5g01791 1036 MobiDBLite consensus disorder prediction 156 189 - -
Seca5g01791 1036 ProSiteProfiles JmjC domain profile. 628 999 IPR003347 -
Seca5g01791 1036 SUPERFAMILY Clavaminate synthase-like 503 1019 - -
Seca5g01791 1036 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 1033 IPR045109 GO:0032454|GO:0033169
Seca5g01791 1036 Pfam WRC 14 51 IPR014977 -
Seca5g01791 1036 Gene3D Cupin 790 1008 - -
Seca5g01791 1036 Pfam JmjC domain, hydroxylase 882 982 IPR003347 -
Seca5g01791 1036 MobiDBLite consensus disorder prediction 156 178 - -
Seca5g01791 1036 Gene3D Cupin 495 739 - -
Seca5g01791 1036 MobiDBLite consensus disorder prediction 1 23 - -
Seca5g01791 1036 FunFam Transcription factor jumonji (JmjC) domain-containing protein 815 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01791 Seca-Chr5 52377413 52391892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01791 14 94 GRF Transcription Factor Family AT4G37740 32.941 8.56e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca5g01791 JmjC 2.1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01791 K15601 - gmx:100808936 1326.61