Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01779 ATGAATCCCTTTTTGCTCATGTTGCTTGCATTTTGGTCTATATGCCTTTATATACTTCCATTTACTTTGAACTCATTGGGGTTTGGCCTAAACACAATATTTGCCTCTGCATCAGGAAACAATACTGACCATTTGGCATTGCTCAAATTCAAGGAATCAATATCTAGTGACCCATATGGAATCCTTGATTCTTGGAATAGTTCTACCCACTTTTGCAAGTGGCATGGAATCACATGCAGCCCCATGCATCAAAGAGTCACAGAGTTAAACCTAGAAGGATATCAATTGCATGGATCCATATCCCCCCATGTTGGAAATCTCTCTTTTTTGAGACACCTCAACCTTCCAAACAATAGCTTCTTTGGACAAATCCCAAAGGAAATTGGTCGGTTGTCACAATTGCAGCAACTAGATCTCACCAATAACTCATTGGCAGGAGAAATCCCCACAAACTTGACAAATTGTTCAGATCTCAAAGTCTTATACTTATTTGGGAACAATTTGATTGGAAGAATCCCAATTGAAATTGGCTCCCTTCAAAAGCTTCAAATGTTGAGAGTTGGGAAAAACAATCTAATTGGAGGAGTCCCACCATCCATAGGGAATCTTTCATCCTTAACTTGTCTCTCAGTATTTTATAATAACTTAGAAGGAGATATTCCACAAGAAGTATGCCACCTTAGAAACTTGACAAAAATATCAGTGGCTCTCAACAAACTGTCTGGTACACTTCCTTCTTGTCTTTACAACATGTCTTCTCTTACTATGTTCTCATCTACACAAAATGAATTTAATGGGTCTCTTCCACCCAACATGTTCCACAACCTCCCATATCTCCAATATTTTGGAATTGATTCCAATCAAATCTCAGGTCCAATTCCCACTTCCATTGTAAATGCTTCTACCCTTACAACACTTGATATTGGTAGAAACCATTTTTCTAAACAAGTTCCAAGTCTAGAGAAGCTACAAGAACTTCAGTTTCTACATTTGGGAGTGAACAATCTAGGTGACAATTCACCTAAGGATTTGCAATTTTTAAAATCATTGACAAATTGTAGCAAGTTGTATATGGTCGATATATCTAAAATTAATTTTGGAGGCCATTTACCACATGTCATAGGAAATTTGTCCACCAACCTCATTGAACTATATCTTGGGGGTAATCATATATTAGGAAAAATTCCTGTGGAATTGGGAAATTTAATTAGCTTAACTCTCTTGACCATGGAATATAGTGGTTTTGAAGGGAGGATTCCAGCTACTTTTGGGAAGTTTCAGAAGATGCAACAGTTAAGATTGACTGGAAACAAGCTGTCAGGAGATATACCAACCATCATAGGCAACCTTAGTCAATTGTATCATTTGAGCTTAGCACAAAATTTCTTAGAAGGAAGTATTCCTCCAAGTATAGGAAACTGCAAGATGTTACAATATCTAGACCTTTCTCAAAACAACCTTAAAGGAACCATACCCCCAGAAGTTTTTAGTCTTTCATCTTTAACAATAGGTCTGAACTTATCACAAAACTTGTTGAGTGGCAATCTACCTGATGATGTGGGTTCACTAAAAAATATTGGGAACATGGATATCTCTGAAAATCATTTGTCTGGTGAAATTCCTAAAACCATTGGAGAATGCACAAGCTTGGAGTATCTTTATTTGCAAGGGAACCTCTTCCATGGAATTATACCAACCTCTTTGGCTTCACTCAAAGGCCTTCGACATTTAGACCTATCACAAAACTGCTTGTCTGGATCAATACCTGATGTTCTACAAAATATTTATGTTTTAGAACATTTAAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACACAAGGTGTCTTTGGAAATGCAAGCAAGTTAGGGGTGATTGGAAATAGTCAGCTTTGTGGAGGTATTTTGGAGTTACATCTACCACCATGCATTGCCAAAGGTAAAAAACTTGTAAAATTCCATAATTTCAAGTTCATAACAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATACTTCTATCTATTCTAACTGTCTATTGTATGAGGAAAAGAAACAAGACACCATCTTCTAATCTACCAACAGTTGACCGTTTCGCTAAGCTTTCATACCAAATCCTATATCATGGAACCGAAGGGTTCTCTACAAGAAACTTGATAGGATTTGGAAGTTTTGGCACTGTGTACAAAGGAATTATTGAGTCATACGACAGAGTTGTTGCCATAAAAGTCCTAAATCTTCAAAATATAGGATCTCACAAGAGTTTCTTTGCTGAATGCAATGCATTAAAAAATATCAGGCATCGAAATTTGGTTAAGATTCTATCATGTTGTTCCAGTATTGATTACAATTGTCAAGAATTTAAAGCTCTAGTTTTCGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTACATCCGACAACAAAAATTGCAAACCAGCCTAGATCACTGGACCTTGAGGAAAGGTTGAATATTATTACTAATGTTGCTACAGCTTTTCATTATCTTCACTATGAATGTGAGCAAGTAATCATTCACTGTGATCTAAAGCCTAGCAATGTTCTTCTTGATGAGTTCATGGTGGCTTATGTCAGTGATTTTGGCTTAGCAAGATTGCTCCCAAGTATTGGATTCTCTTCAATGCAAAGTAGCACCATTGGAATAAAGGGGACTATTGGTTATGTTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCAATTGAAGGCGACATGTACAGCTTTGGAATTCTTGTACTAGAAATGTTAACTGGAAGGAGACCCACAGATGAAATGTTTAAAGATGATCATAATCTCCATAATTATGTTGAACATTCAATTTCAAATCACCTTTTGCAAATTGTGGACCCAACTATCCTCCCCAATGAATTAAAGCAGGCTGTTGACAACAAGAACCTTGGTCTTATGCATCCTAATATAGAGAAATGTTTATTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGGGAGCTTAACCTAATCAAAAGTTTCTTTCCTTTATGGGTTTAG 3072 0.3665 MNPFLLMLLAFWSICLYILPFTLNSLGFGLNTIFASASGNNTDHLALLKFKESISSDPYGILDSWNSSTHFCKWHGITCSPMHQRVTELNLEGYQLHGSISPHVGNLSFLRHLNLPNNSFFGQIPKEIGRLSQLQQLDLTNNSLAGEIPTNLTNCSDLKVLYLFGNNLIGRIPIEIGSLQKLQMLRVGKNNLIGGVPPSIGNLSSLTCLSVFYNNLEGDIPQEVCHLRNLTKISVALNKLSGTLPSCLYNMSSLTMFSSTQNEFNGSLPPNMFHNLPYLQYFGIDSNQISGPIPTSIVNASTLTTLDIGRNHFSKQVPSLEKLQELQFLHLGVNNLGDNSPKDLQFLKSLTNCSKLYMVDISKINFGGHLPHVIGNLSTNLIELYLGGNHILGKIPVELGNLISLTLLTMEYSGFEGRIPATFGKFQKMQQLRLTGNKLSGDIPTIIGNLSQLYHLSLAQNFLEGSIPPSIGNCKMLQYLDLSQNNLKGTIPPEVFSLSSLTIGLNLSQNLLSGNLPDDVGSLKNIGNMDISENHLSGEIPKTIGECTSLEYLYLQGNLFHGIIPTSLASLKGLRHLDLSQNCLSGSIPDVLQNIYVLEHLNVSFNMLDGEVPTQGVFGNASKLGVIGNSQLCGGILELHLPPCIAKGKKLVKFHNFKFITVIVSVVAFLLILLSILTVYCMRKRNKTPSSNLPTVDRFAKLSYQILYHGTEGFSTRNLIGFGSFGTVYKGIIESYDRVVAIKVLNLQNIGSHKSFFAECNALKNIRHRNLVKILSCCSSIDYNCQEFKALVFEYMKNGSLESWLHPTTKIANQPRSLDLEERLNIITNVATAFHYLHYECEQVIIHCDLKPSNVLLDEFMVAYVSDFGLARLLPSIGFSSMQSSTIGIKGTIGYVPPEYGMGSEVSIEGDMYSFGILVLEMLTGRRPTDEMFKDDHNLHNYVEHSISNHLLQIVDPTILPNELKQAVDNKNLGLMHPNIEKCLFSLFRIGLACSVESPKERMSMVDVIRELNLIKSFFPLWV. 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01779 1023 SUPERFAMILY L domain-like 65 351 - -
Seca5g01779 1023 Gene3D Ribonuclease Inhibitor 258 349 IPR032675 -
Seca5g01779 1023 ProSiteProfiles Protein kinase domain profile. 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01779 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Seca5g01779 1023 Gene3D Phosphorylase Kinase; domain 1 695 795 - -
Seca5g01779 1023 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 42 153 - -
Seca5g01779 1023 SMART serkin_6 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01779 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 650 - -
Seca5g01779 1023 Pfam Protein kinase domain 716 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01779 1023 SUPERFAMILY Protein kinase-like (PK-like) 688 1013 IPR011009 -
Seca5g01779 1023 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Seca5g01779 1023 SUPERFAMILY L domain-like 379 634 - -
Seca5g01779 1023 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Seca5g01779 1023 Pfam Leucine rich repeat 429 487 IPR001611 GO:0005515
Seca5g01779 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1020 - -
Seca5g01779 1023 Gene3D Transferase(Phosphotransferase) domain 1 796 1018 - -
Seca5g01779 1023 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Seca5g01779 1023 FunFam Predicted protein 171 271 - -
Seca5g01779 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 795 - -
Seca5g01779 1023 Gene3D Ribonuclease Inhibitor 42 192 IPR032675 -
Seca5g01779 1023 Gene3D Ribonuclease Inhibitor 193 254 IPR032675 -
Seca5g01779 1023 Gene3D Ribonuclease Inhibitor 350 651 IPR032675 -
Seca5g01779 1023 SMART LRR_typ_2 131 155 IPR003591 -
Seca5g01779 1023 SMART LRR_typ_2 203 227 IPR003591 -
Seca5g01779 1023 SMART LRR_typ_2 571 594 IPR003591 -
Seca5g01779 1023 SMART LRR_typ_2 475 498 IPR003591 -
Seca5g01779 1023 SMART LRR_typ_2 450 474 IPR003591 -
Seca5g01779 1023 PANTHER OS04G0122200 PROTEIN 115 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01779 Seca-Chr5 52229535 52232758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01779 40 1019 Receptor kinase-like Gene Family AT3G47570 44.859 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca5g01779 Pkinase 8.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01779 - - gmx:100792724 1381.7