Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01775 ATGGTTAAGTGGTTGAAGATTGGAGTCATTGGAAGTGGTAGTCATGGCACCGTTTACAAAGCTATCAGTTCTGCACCAGGGAAAAATTCTCTAAAGCCAATAGCTATAAAGAGTGCAACGCTTAGCAAGTCTTATGAGTTGTATAGAGAAGCGGACATTCTAAACTCTTTCATTTGTGTTCCAGAAATTGTTCAATCCCAGGGCAATGATGTCACCATGGAGGATGGTGAGTGGGTCTACAATCTCTACTTGGAGTATGCCCCTTTTGGCACTCTTGGTGACATGATCAAGAAAGGGCGTTTCTTGGAGAACAAGACAACAAAAGTCTACATGAACATGCTCCTAAAAGGCCTTTCCCGCATCCACCAAAGAGGATTTGTACATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCACCACATTCATATCAAGATAGTAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTAAGACTTCTGAGGAGAAGGTGAACCAAGAAGATTGGAAGTGGAGATGTAGAGGGACTCCTTTATTCATGTCACCCGAATCACTTTCATGTGGCCAAATTGAAGCACCTTTGGACATATGGTCTTTTGGGTGCATAGTTCTTGAGATGCTCACTGGATACCCTGCATGGAGGAATGAGGTGAAAACTGAAGAGGACATAATAATTAAGGTTGGTATTATGAAAGAAGCACCAGAGATTCCACTTGAACTGAGTAATGGATGCATTGACTTTTTAAACAAGTATTTTGCACCAGACCCAAGTCAAAGATGGACAGCTGACATGCTTATGTATCATCCTTATATTCTTTTGGATTTGGAGTAG 840 0.4095 MVKWLKIGVIGSGSHGTVYKAISSAPGKNSLKPIAIKSATLSKSYELYREADILNSFICVPEIVQSQGNDVTMEDGEWVYNLYLEYAPFGTLGDMIKKGRFLENKTTKVYMNMLLKGLSRIHQRGFVHCDLKPDNILVFPPHSYQDSRYYQLKIADFGLAKTSEEKVNQEDWKWRCRGTPLFMSPESLSCGQIEAPLDIWSFGCIVLEMLTGYPAWRNEVKTEEDIIIKVGIMKEAPEIPLELSNGCIDFLNKYFAPDPSQRWTADMLMYHPYILLDLE. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01775 279 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 274 - -
Seca5g01775 279 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Seca5g01775 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Seca5g01775 279 Pfam Protein kinase domain 7 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01775 279 Gene3D Transferase(Phosphotransferase) domain 1 3 279 - -
Seca5g01775 279 SMART serkin_6 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01775 279 SUPERFAMILY Protein kinase-like (PK-like) 4 274 IPR011009 -
Seca5g01775 279 ProSiteProfiles Protein kinase domain profile. 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01775 Seca-Chr5 52138386 52139225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01775 2 279 MAP Kinase Kinase Kinase AT4G36950 38.869 1.14e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca5g01775 Pkinase 8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01775 - - gmx:102667952 263.848