Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01749 ATGTATCTTTCAAAGGGTCATAAGCATGAAGTTGTTTTCATCTTGTGGTTCTGCTGCTATTTGCTACTGGCTGCTGCGCAGAATAATATCACTGACCCAACTGAAGTTGAAGCATTGAAAGCCATAAAGAACAGTTTGATAGATCCTAATGGAAATTTGAGCAATTGGAATCGTGGAGACCCATGTACATCTCGCTGGACAGGAGTTTTGTGCTTCAATGAAACATTAGTGGATGGCTTTCTACATGTTCAAGAATTGCAACTGTTTAATTTGAGCTTGTCCGGAACTTTGGCACCAGATATTGGCAACTTAGCTTATATGGAAATATTGAACTTCATGTGGAATAAAATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAAACTTTACAACTGTTGCTCGTGAATGGAAATGAATTAACAGGTCCACTTCCGGAGGAGCTTGGCTATCTTCCAAACCTTGATAGAATACAGATTGATCAGAACAATATATCAGGACCTCTACCTGCATCATTTGCAAACCTGAAAAAGACAAAGCACTTTCACATGAACAATAATTCAATAAGCGGGCAAATCCCACCGGAACTTTCCCGATTACCCAACCTTGTTCACCTCCTTCTCGACAACAACAATTTATCAGGATATCTTCCCCCTGAGCTGTCCTCTTTGCCAAGCTTACTTATACTTCAACTTGATAACAATAACTTTGGTGGAAATACCATTCCGGATGCTTATGGAAACATGTCAAAATTGTTGAAGTTGAGCCTTAGGAATTGTAACTTGCAAGGACCAGTTCCTGATTTAAGCAGGATATCACACCTTCTTTATCTTGATCTCAGTTCCAATCAGTTGAATGAATCAATTCCTCCTAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCTAACAACAGTCTTACTGGAACTATTCCATCCTACTTTTCTAGTCTTCCACACCTTCAGAAATTGTCACTCGCAAACAATTCATTGACAGGCAGTGTTCCTTCCACCATTTGGCAGAACAAAACTTTAAATGGAACAGAAAGATTTCTCTTGGATTTGGAAAATAATAAATTTACAAACATATCAGGCAATACTAATCTGCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCTCTATGCTCAAATAAAACCCTGAGTCAATTCTGTAGATCTGAAAGTGCTGATGACACAAATGGCCTATTTCCATCAAACTCGAGTAACTCGTGTCCTGCTCAATCATGCCCACCTCCTTTTGAATACTCTGTGGATTGTTTCTGTGCGGCTCCATTGCTTGTTGGTTATCGACTGAAAAGTCCCGGGTTTTCAAATTTTCTTCCATACTTGAATACATTTGAGGAATACCTGACTTCTGGTCTTAGTATACATACCAATCAGCTAAACTTTACTGCTCAGTGGCAAGCAGGACCTCGACTGAGAATGAACTTGAAGATTTTTCCTGTATATGTTGATAACACCAGTTCTCATACTTTTAATAGAAGTGAGGTCCTACGGATCAGAAGCATGTTCACAGGTTGGAAAATTCCTGACAGTGATTTGTTTGGGCCTTATGAACTGATCAACTTCATTCTCCTGCCTCCATACAATGATGCAGTGATTACCACCTCTTCAAAATCAGGGATAAGTACAGGTGCACTAGTTGGCATAATCTTAGGGTCAATTGCTTGTGCAGTGACGTTGTCCGCAATTGTTACTCTTCTTATATTAAGAATACAATTGAGAAAACATCATGCAGTTTCTAAAAGACGTCATGCATCTAAAATCTCAATAAAAATTGATGGCGTAAGGGCCTTTAGTTATGGAGAATTGTCCTCTGCTACAAACAATTTTAGTAGCTCCGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTATATAAAGGTATTCTTGTAGATGGAACAGTTGTTGCCATAAAACGTGCACAAGAAGGATCCCTACAAGGTGAGAAGGAGTTCCTTACTGAAATATCATTACTGTCAAGGTTACATCATCGCAACCTTGTGTCTCTGCTCGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACACTAAGGGATCACCTTTCCGTTACATCAAAAGAACCCCTGTCTTTCGCCATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGTCTTGCATATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTCAAGGCCAGCAACATATTATTGGACCCCAAGTTCTCTGCAAAAGTGGCTGATTTTGGACTATCACGACTTGCTCCAGTTCCAGATATTGAAGGGATTGTGCCTGGTCATGTATCTACCGTCGTAAAGGGAACCCCAGGTTACCTTGATCCAGAATACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTCTGACCGGGATGCAACCTATCTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATATCAATCTGGTGTAATATTTTCAATAATTGATGGACGAATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGAGTTTGGCCCTCAAGTGTTGTGAAGATGAGCCAGATGCACGGCCTAAAATGGCAGAAGTGGTTAGAGAGCTTGAAAACCTATGGTCTGTGATGCCGGATTCAGATACCAGGAGAGCTGAATCTATAACCAGTGATTCTGGCAAAGAAATCAGTGCACCATCTTCATCCTCTGCTATAAAGACTCATTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTATTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2850 0.4014 MYLSKGHKHEVVFILWFCCYLLLAAAQNNITDPTEVEALKAIKNSLIDPNGNLSNWNRGDPCTSRWTGVLCFNETLVDGFLHVQELQLFNLSLSGTLAPDIGNLAYMEILNFMWNKITGSIPKEIGNIKTLQLLLVNGNELTGPLPEELGYLPNLDRIQIDQNNISGPLPASFANLKKTKHFHMNNNSISGQIPPELSRLPNLVHLLLDNNNLSGYLPPELSSLPSLLILQLDNNNFGGNTIPDAYGNMSKLLKLSLRNCNLQGPVPDLSRISHLLYLDLSSNQLNESIPPNKLSENITTIDLSNNSLTGTIPSYFSSLPHLQKLSLANNSLTGSVPSTIWQNKTLNGTERFLLDLENNKFTNISGNTNLPPNVTLLLDGNPLCSNKTLSQFCRSESADDTNGLFPSNSSNSCPAQSCPPPFEYSVDCFCAAPLLVGYRLKSPGFSNFLPYLNTFEEYLTSGLSIHTNQLNFTAQWQAGPRLRMNLKIFPVYVDNTSSHTFNRSEVLRIRSMFTGWKIPDSDLFGPYELINFILLPPYNDAVITTSSKSGISTGALVGIILGSIACAVTLSAIVTLLILRIQLRKHHAVSKRRHASKISIKIDGVRAFSYGELSSATNNFSSSAQVGQGGYGKVYKGILVDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLLGYCDEEGEQMLVYEFMSNGTLRDHLSVTSKEPLSFAMRLKIALGAAKGLAYLHTEADPPIFHRDVKASNILLDPKFSAKVADFGLSRLAPVPDIEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLSLALKCCEDEPDARPKMAEVVRELENLWSVMPDSDTRRAESITSDSGKEISAPSSSSAIKTHFVSGDVSGSDLISGVIPSIKPR. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01749 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Seca5g01749 949 Pfam Leucine rich repeat 297 343 IPR001611 GO:0005515
Seca5g01749 949 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Seca5g01749 949 SUPERFAMILY Protein kinase-like (PK-like) 605 903 IPR011009 -
Seca5g01749 949 SMART serkin_6 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01749 949 CDD STKc_IRAK 626 892 - -
Seca5g01749 949 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Seca5g01749 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 293 422 - -
Seca5g01749 949 SUPERFAMILY L domain-like 46 393 - -
Seca5g01749 949 Gene3D Transferase(Phosphotransferase) domain 1 696 911 - -
Seca5g01749 949 MobiDBLite consensus disorder prediction 900 922 - -
Seca5g01749 949 Gene3D Ribonuclease Inhibitor 33 187 IPR032675 -
Seca5g01749 949 ProSiteProfiles Protein kinase domain profile. 620 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01749 949 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 906 - -
Seca5g01749 949 Gene3D Ribonuclease Inhibitor 295 384 IPR032675 -
Seca5g01749 949 Gene3D Ribonuclease Inhibitor 188 294 IPR032675 -
Seca5g01749 949 Gene3D Phosphorylase Kinase; domain 1 582 695 - -
Seca5g01749 949 Pfam Protein kinase domain 622 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01749 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Seca5g01749 949 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Seca5g01749 949 PANTHER RECEPTOR-LIKE PROTEIN 55 42 891 - -
Seca5g01749 949 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca5g01749 949 SMART LRR_typ_2 200 223 IPR003591 -
Seca5g01749 949 SMART LRR_typ_2 152 175 IPR003591 -
Seca5g01749 949 SMART LRR_typ_2 319 343 IPR003591 -
Seca5g01749 949 SMART LRR_typ_2 272 296 IPR003591 -
Seca5g01749 949 SMART LRR_typ_2 224 248 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01749 Seca-Chr5 51654950 51667264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01749 18 902 Receptor kinase-like Gene Family AT5G01950 61.136 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca5g01749 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01749 - - gmx:100786467 1521.14