Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01744 ATGAGCAGCATTTTATCAAACAACAATCTTACTGGAACTATTTCATCCTCCTTTTCTGGTCTTCCACGTCTCCAGAAATTGTCACTTGCAAACAATTCATTGACCGGTGGTGTTCCTTCCACCATTTGGCAAAGCAAGACTTCAAATGAAAAAGAAAGACTTCTCTTGGAATTGGAAAATAATAAATTTACAACCATATCAGGAAGTACTAATCTTCCTCCAAATGTCACACTCTTGCTTGATGGAAATCCTTTATGCTCAAATAACACCCTGGATCAATTTTGTAAATCTGAAGGTGTTAATGACACAAATGACACGTTTGCGACAAACTCGAGTGACTTTTGTCCCACCCAAGCATGCCCTCCTCCTTATGAATACTCTATGAATTGTTTTTGTGCAGCTCCATTGCTTATTGGTTTTCGACTAAAAAGTCCTGGATTTTCAGATTTTCCTCCATACTTGAACACATTTGTGAAATACATGACTTCTGGTCTTAAAATACATTCCAATCAACTCAACTTTACTTTTCGGTGGCAAACAGGACCTCGATTGAGAATGAATTTAAAGCTTTTTCCTTTATATGTTGATAACAATAGTTCTCATACTTTCAATAGAAGTGAGGTTCAAAGGATAATAAGCTTATTCACAGAATGGACATTTCCTAGTGATGATTTGTTTGGGCCTTATGAACTGATTGACTTGACTCTCCTGGATCCTTACAAGGACGTGATTGACACCTCTTCAAAAGCAAGCATAGGGATGGCTGCAATGGTTGGCATAATCTTAGGATCAATTGCTTGTGTAATGACATTGTCTGCAATTGTTATTCTTTTCATGTTAAGAAAACAATTGAGAGGTAGTCATGGAGTTTCCAAACCACGTCATGCACCTAAGACATCAATAAAAATTGATGGCATAAAGGCCTTCACTTATGAAGAGTTGTCCTCTGCTACAAACAATTTTGACTCCTCTGCTCAAGTTGGACGAGGAGGATATGGGAAAGTTTATAAAGGTGTTATTTCTGATGGCACAGTTGTTGCCATAAAACGTGCCCAACATGGATCACTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCAATACTCTCAAGGTTACATCATCGTAACCTTGTTACTCTGATTGGATATTGTGATGAAGAAGGTGAACAGATGCTTGTTTATGAATTTATATCGAATGGCACTCTAAAGGACCACCTTTCTGATACATCAGAAAAGCCTCTAACTTTTGCCATGAGATTGAAGATAGCCCTAGGGACAACTAAAGGTCTAACATACCTACACACAGAAGCTGATCCACCAATATTTCACCGAGATGTCAAGGCCAACAACATATTATTGGATAATGAATTCAATGCAAAAGTGGCTGATTTTGGACTTTCAAAGCTTGCCCCAGTTCCAGATATTGAAGGAATTGTTCCTGGTCATGTATCTACATTGGTAAAGGGGACCCCAGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTAGAACTTTTGACTGGAATGCAACCTATCTCACATGGCAAAAATATTGTAAGAGAGGTTACTGATGCTTACCATTCTGGTGAGTTATTTTCAGTTATTGATGGACGCATGGGGTCTTATCCATCTGAGCATGTGGAGAATTTTTTTACTTTAGCCCTTAAGTGTTGCCAAGACGAGCCAGAGGCACGTCCTAAAATGGAACAAGTGGTTAGAGTGCTTGAAAACATATGTTCTATGATGCCAGATTCAGATACCATGAGAGTTGAATATATTACCAATGATTCTGGCAGAGGAGCAATCGGTACACCATCTTCATCCTCTGTTGTAAGGACTCCTTTTGTATCAGCAGATGTGTCAGGTAGTAACCTTGTTAGTGGTGTAATACCAAGCATCAATCCAAGATAA 1956 0.387 MSSILSNNNLTGTISSSFSGLPRLQKLSLANNSLTGGVPSTIWQSKTSNEKERLLLELENNKFTTISGSTNLPPNVTLLLDGNPLCSNNTLDQFCKSEGVNDTNDTFATNSSDFCPTQACPPPYEYSMNCFCAAPLLIGFRLKSPGFSDFPPYLNTFVKYMTSGLKIHSNQLNFTFRWQTGPRLRMNLKLFPLYVDNNSSHTFNRSEVQRIISLFTEWTFPSDDLFGPYELIDLTLLDPYKDVIDTSSKASIGMAAMVGIILGSIACVMTLSAIVILFMLRKQLRGSHGVSKPRHAPKTSIKIDGIKAFTYEELSSATNNFDSSAQVGRGGYGKVYKGVISDGTVVAIKRAQHGSLQGEKEFLTEISILSRLHHRNLVTLIGYCDEEGEQMLVYEFISNGTLKDHLSDTSEKPLTFAMRLKIALGTTKGLTYLHTEADPPIFHRDVKANNILLDNEFNAKVADFGLSKLAPVPDIEGIVPGHVSTLVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVTDAYHSGELFSVIDGRMGSYPSEHVENFFTLALKCCQDEPEARPKMEQVVRVLENICSMMPDSDTMRVEYITNDSGRGAIGTPSSSSVVRTPFVSADVSGSNLVSGVIPSINPR. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01744 651 SUPERFAMILY Protein kinase-like (PK-like) 306 609 IPR011009 -
Seca5g01744 651 Gene3D Phosphorylase Kinase; domain 1 292 396 - -
Seca5g01744 651 SMART serkin_6 321 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01744 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Seca5g01744 651 FunFam Leucine-rich repeat protein kinase family protein 287 396 - -
Seca5g01744 651 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 606 - -
Seca5g01744 651 SUPERFAMILY L domain-like 5 88 - -
Seca5g01744 651 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Seca5g01744 651 Pfam Protein kinase domain 323 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01744 651 Gene3D Transferase(Phosphotransferase) domain 1 397 611 - -
Seca5g01744 651 ProSiteProfiles Protein kinase domain profile. 321 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01744 651 CDD STKc_IRAK 327 593 - -
Seca5g01744 651 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 397 606 - -
Seca5g01744 651 Gene3D Ribonuclease Inhibitor 3 123 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01744 Seca-Chr5 51582537 51588125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01744 5 606 Receptor kinase-like Gene Family AT5G01950 55.447 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca5g01744 Pkinase 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01744 - - gmx:100786467 952.584