Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01738 ATGGTGATGATGCTAAACCAGGAAAATATGAAGGCCAGCAAAGTGTACTCCAAATCTAATTGTCAATATCCTATTCCTTACAGTCAAGTAGTCTCTGTGAAGTCCTCTTCTACTTCAGTGGCTTCTTTCCTTTTTGTCATAGTTATTCTTTTTCCTCTGGCCATTGCTGACCTGAGTTCAGATAAGCAAGCCCTTCTTGATTTTGCTAATGCCGTGCCCCACCGCCGGAACCTTCTGTGGAATCCATCCACCTCAGTCTGTACATCTTGGGTAGGCATCACTTGCAATCAAAATGGAACTCGTGTTATATATGTCCGCCTCCCCGGTGTTGGACTAGTTGGTTCCATCCCATCTAATACACTCGGAAAACTTGATGCTGTGAAAATTATTAGCCTCCGGTCCAACCTACTCAGTGGAAATCTTCCTGCCGACATTACTTCTCTTCCTTCTCTCCAGTATCTCTACCTCCAGCATAATAACCTCTCTGGTGATATACCTGTCTCATTGCCACTTCAACTAATTGTACTTGATTTGTCATATAATTCCTTCACTGGTGGCATTCCAAAGACATTACAAAATTTGACAGAATTAAGTAGTTTGAATCTCCAGAACAACTCCCTGTCTGGACTGATACCTGATTTCAATGTTACTAATCTCAAGCATTTGAATTTAAGCTACAACCATTTGAATGGCTCTATTCCATCAGCTCTTCAGATTTTTCCTAATTCATCCTTTGAAGGAAACTCTCTTTTATGTGGACCACCTCTAAAGCCATGCTCTGTGGTTCCCCCTTCTCCTTCTCCTGCCTTGACTCCTACTCCATCATCGGCTCCTGGAAGAGTAAGCTCCAAAAGTAAATTGAGTAAGGTAGCTATCATTGCAATTTCTGTTGGAGGAGCTGTGGTGCTATTTTTTGTAGTTCTTGTTATTGTTCTTTGCTGTTTAAAGAAGGAAGATGAAAGAGACCCCAGTGCAATTAAAGGGAAAGGTCCTGGTGGTGGTAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGAAGTTCTTATAATTTTGATCTTGAAGATTTGTTGAGAGCTTCAGCTGAAGTTCTGGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATACTGGAGGAGTCAACAACAGTCGTAGTGAAGAGGTTGAAAGAAGTTGTGGTAGGCAAGAAGGACTTTGAACAGCAGATGGAGATTATGGGAAGGGTTGGACAACACACCAATGTTGTGCCACTTCGTGCTTATTATTATTCAAAAGACGAAAAGCTTTTGGTTTATGACTATGTCTCAGCTGGCAATCTATACACACTCTTACATGGAAGTCGGACAGGTGGAAGAACTCCATTAGATTGGGACTCCCGAGTAAAAATATCCCTTGGAACTGCCAGAGGACTTGCTCACATCCATTCTGTTGGTGGTCCCAAATTCATACATGGAAACATTAAGTCCTCAAATGTCCTCCTCAACCAAGACAATGATGGCTGCATTTCTGATTTTGGCCTGGCCCCTCTTATGAATGTTCCAGCAACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGCAAGCACTCTCATAAATCAGATGTCTACAGCTTTGGTGTTCTCCTTCTGGAGATGCTTACTGGGAAGGCGCCTCTCCAGTCTCCGGGACGTGATGATATGGTTGATCTCCCTAGATGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCTTGTGTGGCAAAGATGCCAGATATGAGACCAAGCATGGATGAAGTAGTGAGAATGATTGAAGAGGTTCGGCAATCTGACTCAGAGAACCGACCATCTTCTGAAGAGAACAAATCTAAGGACTTAAATGTTCAAACTCCATAG 2004 0.4316 MVMMLNQENMKASKVYSKSNCQYPIPYSQVVSVKSSSTSVASFLFVIVILFPLAIADLSSDKQALLDFANAVPHRRNLLWNPSTSVCTSWVGITCNQNGTRVIYVRLPGVGLVGSIPSNTLGKLDAVKIISLRSNLLSGNLPADITSLPSLQYLYLQHNNLSGDIPVSLPLQLIVLDLSYNSFTGGIPKTLQNLTELSSLNLQNNSLSGLIPDFNVTNLKHLNLSYNHLNGSIPSALQIFPNSSFEGNSLLCGPPLKPCSVVPPSPSPALTPTPSSAPGRVSSKSKLSKVAIIAISVGGAVVLFFVVLVIVLCCLKKEDERDPSAIKGKGPGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYVSAGNLYTLLHGSRTGGRTPLDWDSRVKISLGTARGLAHIHSVGGPKFIHGNIKSSNVLLNQDNDGCISDFGLAPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEVRQSDSENRPSSEENKSKDLNVQTP. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01738 667 Pfam Leucine Rich Repeat 173 194 IPR001611 GO:0005515
Seca5g01738 667 Pfam Leucine Rich Repeat 218 238 IPR001611 GO:0005515
Seca5g01738 667 MobiDBLite consensus disorder prediction 641 658 - -
Seca5g01738 667 Pfam Leucine rich repeat 115 161 IPR001611 GO:0005515
Seca5g01738 667 FunFam Leucine-rich repeat receptor-like protein kinase 60 170 - -
Seca5g01738 667 FunFam pollen receptor-like kinase 1 340 447 - -
Seca5g01738 667 ProSitePatterns Protein kinases ATP-binding region signature. 378 409 IPR017441 GO:0005524
Seca5g01738 667 Pfam Protein kinase domain 375 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01738 667 CDD STKc_IRAK 378 642 - -
Seca5g01738 667 Gene3D Transferase(Phosphotransferase) domain 1 448 666 - -
Seca5g01738 667 ProSiteProfiles Protein kinase domain profile. 372 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01738 667 SUPERFAMILY L domain-like 60 259 - -
Seca5g01738 667 Gene3D Ribonuclease Inhibitor 172 260 IPR032675 -
Seca5g01738 667 FunFam Leucine-rich repeat receptor-like protein kinase 171 259 - -
Seca5g01738 667 SUPERFAMILY Protein kinase-like (PK-like) 376 649 IPR011009 -
Seca5g01738 667 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Seca5g01738 667 MobiDBLite consensus disorder prediction 323 347 - -
Seca5g01738 667 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 448 655 - -
Seca5g01738 667 Gene3D Ribonuclease Inhibitor 59 171 IPR032675 -
Seca5g01738 667 PANTHER OS05G0588300 PROTEIN 44 655 - -
Seca5g01738 667 Gene3D Phosphorylase Kinase; domain 1 340 447 - -
Seca5g01738 667 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
Seca5g01738 667 MobiDBLite consensus disorder prediction 333 347 - -
Seca5g01738 667 MobiDBLite consensus disorder prediction 641 667 - -
Seca5g01738 667 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01738 Seca-Chr5 51450616 51453334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01738 37 665 Receptor kinase-like Gene Family AT5G58300 67.610 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g01738 Pkinase 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01738 - - gmx:100796171 1071.23