Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01734 ATGTCCGTACAATCGACCTTGAAGCTCCAGCATCTGAAGCAAACAACTGCAAGCTCCCATTTTGAGGGAGACCCACCATGCAAAACCACCATGAGAACCCAGCAGCACCAGAAGAAGCTCCTCCGGATCATACTCACCGACCACGACGCCACTGACTCTGAATCTTCCGGCGACGATGAAGAGCCACAAAACCCATCAAGGCTTCGAAGAGTGAAGAGGGAAATCACCCATGTCAACATGCATCTTCCTTTCGTCTCAGATTCTCCAACAACAACCACTTCACCTTCTTATTCATCTTCCTCCCTCCCTGACCCGACCCGTTTCAAGAGACCCAAGAAATCCCCCTCCACTGCCGGCTCTTCTCGCCGCCGTGGCGGCAAGTTCAGGGGAGTTCGCCAGAGACCTTGGGGCCGGTGGACCGCCGAGATCCGAGACCCGACCCGCCGGAAACGGCTCTGGCTCGGGACCTTCGACACGGCGGAGGAAGCCGCCGCCGTTTACGACGAGGCTGCCGTGAAGCTTAAGGGCCCCAACGCCGTCACAAACTTCCCACACCGCGCCACTGCTAAGGCAGAGGAGGAGGAGATGGCGGCGGAAGTTTTCTCCGGCGACGGTTTTGCGTCGCCGACGTCCGTCCTGGACTGTTACGAGCCGTTCGACGGTTTTCGTTACGGCGCGGTGGATGCCTTCGGGTTCGATATAGACGTGCCGTTAAGTCTGACGGACGTTAACTTTGTGCTAACGAGTCAGCGGTCAGGGAAGGAAGAATTTGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCCAGTTAA 813 0.5732 MSVQSTLKLQHLKQTTASSHFEGDPPCKTTMRTQQHQKKLLRIILTDHDATDSESSGDDEEPQNPSRLRRVKREITHVNMHLPFVSDSPTTTTSPSYSSSSLPDPTRFKRPKKSPSTAGSSRRRGGKFRGVRQRPWGRWTAEIRDPTRRKRLWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPHRATAKAEEEEMAAEVFSGDGFASPTSVLDCYEPFDGFRYGAVDAFGFDIDVPLSLTDVNFVLTSQRSGKEEFGEFDPDEFLTWPS. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01734 270 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Seca5g01734 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 194 - -
Seca5g01734 270 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Seca5g01734 270 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Seca5g01734 270 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Seca5g01734 270 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Seca5g01734 270 MobiDBLite consensus disorder prediction 83 105 - -
Seca5g01734 270 MobiDBLite consensus disorder prediction 1 36 - -
Seca5g01734 270 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Seca5g01734 270 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Seca5g01734 270 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Seca5g01734 270 FunFam Ethylene-responsive transcription factor 2 127 185 - -
Seca5g01734 270 PIRSF PTI6 7 270 IPR017392 GO:0003700
Seca5g01734 270 MobiDBLite consensus disorder prediction 48 67 - -
Seca5g01734 270 MobiDBLite consensus disorder prediction 80 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01734 Seca-Chr5 51427343 51428155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01734 28 222 AP2-EREBP Transcription Factor Family AT4G27950 40.376 2.27e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g01734 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01734 K13434 - gmx:102660028 325.479