Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01732 ATGGCAGATGAAACACAAAATGAGCTGAAGGAGGAGGTTGCCGAAATCGCCCCATTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATCACAATTGTAGATCCTGCTGATGATTCAGTGGACAAGTTGGCTGAGAAGACAGAAAATCTGTCAGTTGCAGTTTCTGAGGGGTCTGAGAGTACATTTACTGGTTTAAAAAAGAAGAAGAAGAAGCATGTTGAAATCAGTAACTTAAATGATGAGAGTGGAGATGCAATTGAGGATTTGGATGATCATGCTGAAGAAGATGGAGAGGATGCCATTTCCTTGCAACCTCGTTATCCTTGGGAAGGAAGTGACCGTGATTATAAATATGCGGAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGGCGGAGGACTGTTATGAGGCCTCCACAAGTTCTACGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAACTTGGTACAAGTGGCTCTCTTGATGGACAGCAGAGATTGGTTGTGAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAGTATGTCATTTGCCTCGGATGCAAAAGTCCTGACACAATCCTTACTAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGTTCAGGAAGATCAGTTGCTCCGATCAAGGCTGGTTTTGTTGCTCGCGTTGGCCGTAGGAATGCAGGGACATGA 813 0.4403 MADETQNELKEEVAEIAPFDPTKKKKKKKITIVDPADDSVDKLAEKTENLSVAVSEGSESTFTGLKKKKKKHVEISNLNDESGDAIEDLDDHAEEDGEDAISLQPRYPWEGSDRDYKYAELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILTKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01732 270 FunFam Eukaryotic translation initiation factor 2 subunit 113 255 - -
Seca5g01732 270 Pfam Domain found in IF2B/IF5 139 248 IPR002735 GO:0003743|GO:0006413
Seca5g01732 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 119 269 IPR045196 GO:0003743|GO:0006413
Seca5g01732 270 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g01732 270 Gene3D - 113 255 - -
Seca5g01732 270 SMART eIF2Bneu4 140 249 IPR002735 GO:0003743|GO:0006413
Seca5g01732 270 MobiDBLite consensus disorder prediction 1 28 - -
Seca5g01732 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743|GO:0006413
Seca5g01732 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01732 Seca-Chr5 51358142 51361843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01732 1 266 Eukaryotic Initiation Factors Gene Family AT5G20920 76.493 1.67e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01732 K03238 - gmx:100783618 475.322