LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g01730	ATGTCGTATGTACCTCCACACCTGAGAAATGCGAGCTCAACCACCGTGGCTACCACCACCAGAGCCTCATCCGTAACCCTAGATAATTCCAACCACCATAATACCAAGCTCGCATTCCCTTCCTCAAACACTCACTTCAACAACAACAACAAAACCCCTCAACCTCCATCTCTCTCCTCATTCTCCAATGCCTCTCGCCGGAGTTCCGTCGCTCCTCCGTCGCACCGGATTCTCGCCGTCCCTGACCCCGTCTCCCCTCACTGGCAACCCTCCGAACGCGTTTCCCGCATGAGCCCTGACCAGATTGAAGAGGTTCGCTCACGGCTTAATCTTGATGTTACTGTTGCATCTGACTCTCCTGCTGCACCTGCACCTATAGAATCGTTCACTGATATGTGTTTGCACCCAAGTATCTTGAAGGATATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAGTTGCTCTCAGTGGGAGGGATCTATTGGGTTGTGCTGAAACTGGCAGCGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGACGTGGTGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAGATAGCAGTTGCCACCCCTGGAAGATTTATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGATAATGAGAAATCTTCCTGAGAAGCATCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCTAGGCCTGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACAAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTAGGCTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAAAGAAAGACAAGTTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGTTTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAGCATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCCTAGCTACTTCTTTTTACACTGATCGTGACATGTTCCTTGTGGCGAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGAAACACTGTGTCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCACAAAAAGAGGCAAAAATTACTTCATCCAGTCACTTTGGATTGGGAGCTGCTTCAATTAACATTGAAGATAAGTATAAATTTATGATTACTGCCTCGAACATTAAAGGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA	1719	0.459	MSYVPPHLRNASSTTVATTTRASSVTLDNSNHHNTKLAFPSSNTHFNNNNKTPQPPSLSSFSNASRRSSVAPPSHRILAVPDPVSPHWQPSERVSRMSPDQIEEVRSRLNLDVTVASDSPAAPAPIESFTDMCLHPSILKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLARPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTSCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTVSFATGKVARRKEKEAAAAQKEAKITSSSHFGLGAASINIEDKYKFMITASNIKGEGAADSAWDD.	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g01730	572	CDD	DEADc	138	335	-	-
	Seca5g01730	572	CDD	SF2_C_DEAD	346	484	-	-
	Seca5g01730	572	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	358	516	IPR001650	-
	Seca5g01730	572	Pfam	DEAD/DEAH box helicase	151	321	IPR011545	GO:0003676\|GO:0005524
	Seca5g01730	572	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	199	495	IPR027417	-
	Seca5g01730	572	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	158	334	IPR014001	-
	Seca5g01730	572	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	127	155	IPR014014	GO:0003724
	Seca5g01730	572	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	280	288	IPR000629	-
	Seca5g01730	572	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	103	527	-	-
	Seca5g01730	572	Gene3D	-	87	338	IPR027417	-
	Seca5g01730	572	Gene3D	-	340	534	IPR027417	-
	Seca5g01730	572	MobiDBLite	consensus disorder prediction	1	70	-	-
	Seca5g01730	572	SMART	ultradead3	146	349	IPR014001	-
	Seca5g01730	572	Pfam	Helicase conserved C-terminal domain	377	475	IPR001650	-
	Seca5g01730	572	FunFam	probable ATP-dependent RNA helicase DDX17	87	337	-	-
	Seca5g01730	572	Coils	Coil	213	233	-	-
	Seca5g01730	572	SMART	helicmild6	394	475	IPR001650	-
	Seca5g01730	572	MobiDBLite	consensus disorder prediction	1	99	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g01730	Seca-Chr5	51341173	51349663	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g01730	127	497	Eukaryotic Initiation Factors Gene Family	AT1G72730	35.829	1.03e-69	229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g01730	K12823		-	gmx:100787545	948.347