Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01729 ATGGCAGAGGACAATGTAGTTCTGTTGGATTTCTGGCCAAGTTCTTATGGAATGAGGGTGAAAATAGCTTTGGCTGAGAAGGGGGTTTCATACGAGTGCAAGCAAGAAACCTTTGAAGCTAAAAGTTCTCTGCTCTTAGAAATGAACCCGGTTTACAAAATGATCCCAGTTTTGATTCATAATGGAAAGTCCATTTGTGAATCACTCAACATTGTTGAGTACATTGATGAGACTTGGAACCACAAACCTTCTCTGCTGCCTTCTGACCCTTACAAACGATCCCAAGCCAGGTTTTGGGGCGATTACATTAACAAAAATGTGTACAGCATTGGAAAGAAGGTATGGACAGGAAAGGGTGAAGAACAAGAAGAGGGCAAGAAGCAATTTATAGAATGCTTGAAGATTCTGGAAGAAGAGCTTGGAGACAAACCATATTTTGGTGGTGAGGACTTTGGGTATGTGGATGTGGCTCTTGTTCCCTTCACCAGCTGGTTTTACACATACGAGACTTGTGGGAAACTAAGCATAGGGAAAGAGTGCCCCATGCTTGTGGCTTGGGCCAAGAGGTGCATGGGAAAAGAGAGTGTGGCCAAGTCACTCCCTCACCCTCACAAGATCTATGGTTTTGCACTGCAATATAAACAGAGACATGGACTTGAATAG 663 0.4359 MAEDNVVLLDFWPSSYGMRVKIALAEKGVSYECKQETFEAKSSLLLEMNPVYKMIPVLIHNGKSICESLNIVEYIDETWNHKPSLLPSDPYKRSQARFWGDYINKNVYSIGKKVWTGKGEEQEEGKKQFIECLKILEEELGDKPYFGGEDFGYVDVALVPFTSWFYTYETCGKLSIGKECPMLVAWAKRCMGKESVAKSLPHPHKIYGFALQYKQRHGLE. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01729 220 Gene3D Glutaredoxin 1 88 - -
Seca5g01729 220 CDD GST_C_Tau 90 213 IPR045074 GO:0004364|GO:0006749
Seca5g01729 220 Gene3D - 89 220 - -
Seca5g01729 220 Pfam Glutathione S-transferase, N-terminal domain 8 77 IPR004045 -
Seca5g01729 220 Pfam Glutathione S-transferase, C-terminal domain 123 189 - -
Seca5g01729 220 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Seca5g01729 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Seca5g01729 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Seca5g01729 220 CDD GST_N_Tau 6 79 - -
Seca5g01729 220 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Seca5g01729 220 FunFam Tau class glutathione S-transferase 1 88 - -
Seca5g01729 220 FunFam Glutathione S-transferase U20 89 220 - -
Seca5g01729 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 207 IPR045073 -
Seca5g01729 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
Seca5g01729 220 SFLD Main (cytGST) 2 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01729 Seca-Chr5 51333176 51334491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01729 7 217 Glutathione S-transferase Gene Family AT1G78370 58.768 3.83e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01729 K00799 - gmx:100527221 395.971