Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01725 ATGTGCTTTAGATCTGCCTTTGAGAGTTCAGTTTTCTGTAATAAATTCCACCATCACGAAACTGGTTGGAGGGAGTGTAAATTTTGCAACAAGCTTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCTGCCTAGTATGATGAGGAATAATGAAAATCCTAGTGGGTCTCTTTCATTGACCCAAGCTAATGCAAGTGATCGACATTCTGCTCATTTTGATGGCAGACTGTTTGCGGGTAGTGTTGATGAAGGAAAACTTATGCAATTGTGTAGAGTTGTTGAAGCTAGTGAATCCAGCCGTTGGAATCAAGCTCAGAGAGATGATGTGGATACTGGATTTTCAAATATTATGAAACCATCTGTTCAGTCATTGACATTTGCTACGTTAGAAAATAATAGATCAAAATGGGAGATTAAAAACATACATGAATCAACTGCACAGCCATCTTTGAGTATGTATTTGGGAAACCCATCAAAGAACAAATCTGTCCCGCCTTCTGCTGGAGAGAATGTAGAAGGGCGACTTGAGACCAAACCATCTCCTCCCTTTCATCAAGGGCAAAGATCACGCCCTATATTGCCCAAACTAGTAAAGACTGGGCTTACAATGAATGTGGAAACTGATAAAGGCACAACTTCTCAATCACGTATTGCCCGGCCACCTGCTGAAGGGAAGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAGGAGCTGGAGCGATTGTCCGGGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACAATCTGAAGGCCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGTGGAAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTACAGATACACAGGATGCCTCTACATCTGCACAGTCTAATGGCATTTCAGCCAAGGGATCCACCTTTTCTGGTGGAACTGAGAATCTGCCATCAGGAAGTAATTATGTGGATCTTCTCCATTCCATGAAAGGAAATGGGGAATCTCACTTAAATGGACATCCAGAACATCTGCATTTGGGTACTGGAGCAGCTGGTTTGCTGAAAACTGAAAATGGTGAGGTGAAAAACAATCATTCACTGCAGAAACAAATTTCAGTTTTAGAAAAGAAGAGGACTCGCAATATTGGATCTAAAAGTAAAAGGTTGCTTATTGCTAATGAAGATGCTATGGAGTTGAAACTTACATGGGAAGAGGCACAGGATTTGCTTCGCCCACCGCCTAGCGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGAATTTGAAGAATATGAAGAACCCCCAGTTTTTGGAAAGAGAACAATATTCAGCACCTGTTTGACTGGGGGGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGCTGCCTGTTGACGCTCTTCTTCCGCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCATGTTGTGCACCAGAGGAACTGAGTTCAAGGGAATTGGAAAATCTTCTGAAAACCAACAAAGATTTTAAGAAGCGGCGAATTGTAGAAAATGGCAAGTCAATCGAAGAGCACGAGCACGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTGTTGACCCTGTTGAATCATCAGCTGGAGCCACCACCAAACATCCTCGACACCGTCCTGGCTGCTCCTGTATTGTGTGCATTCAGCCACCAAGTGGAAAGGGAAGACATAAGCCAACATGTACTTGCAATGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTACGGAAGAAGAAACGCCAATCAGAACGCGAAGCAGATGCTGCTGCCCAGAATGATCATATTCACCAAAAAGATGAGTCAGATACCAATGGAGCATCAAGAGATGATACAAGTCATTTAGAGAAAGAGGGAGGTCAAAATAGAGGTCAACCTGAGGTGGGTGAGTCCACTGCTGGACAGATAGATCTGAATAGTGATCCCAACCGTGAAGACATGCAAATGGATCAACTTGAAACAAGTGAATATATGAATGAAAATGGCCTAAGAAACTTTAATAGTGAAGTGCAGCCTGCTCAGCATTCTTCTTTGCTCACTCAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGAAAGATACTTTGCATCTCATGTTTGGAACCAAGAAAGAAGAGATGAGGTATACAGTCATCCCAATCAAAGTCAAAACAATCTTTCTTAA 2526 0.4291 MCFRSAFESSVFCNKFHHHETGWRECKFCNKLIHCGCIVSRSLFEYLDFGGIGCVSCVNTSLPSMMRNNENPSGSLSLTQANASDRHSAHFDGRLFAGSVDEGKLMQLCRVVEASESSRWNQAQRDDVDTGFSNIMKPSVQSLTFATLENNRSKWEIKNIHESTAQPSLSMYLGNPSKNKSVPPSAGENVEGRLETKPSPPFHQGQRSRPILPKLVKTGLTMNVETDKGTTSQSRIARPPAEGKGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNGISAKGSTFSGGTENLPSGSNYVDLLHSMKGNGESHLNGHPEHLHLGTGAAGLLKTENGEVKNNHSLQKQISVLEKKRTRNIGSKSKRLLIANEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQEFEEYEEPPVFGKRTIFSTCLTGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCCAPEELSSRELENLLKTNKDFKKRRIVENGKSIEEHEHEPSGLDALASAAVLGENLVDPVESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAQNDHIHQKDESDTNGASRDDTSHLEKEGGQNRGQPEVGESTAGQIDLNSDPNREDMQMDQLETSEYMNENGLRNFNSEVQPAQHSSLLTQSNGEGQRYFSDERYFASHVWNQERRDEVYSHPNQSQNNLS. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01725 841 ProSiteProfiles B3 DNA-binding domain profile. 277 378 IPR003340 GO:0003677
Seca5g01725 841 Pfam B3 DNA binding domain 277 376 IPR003340 GO:0003677
Seca5g01725 841 MobiDBLite consensus disorder prediction 699 743 - -
Seca5g01725 841 CDD B3_DNA 275 376 IPR003340 GO:0003677
Seca5g01725 841 Gene3D - 255 382 IPR015300 -
Seca5g01725 841 Gene3D - 544 599 - -
Seca5g01725 841 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 783 - -
Seca5g01725 841 FunFam B3 domain-containing transcription repressor VAL1 255 382 - -
Seca5g01725 841 MobiDBLite consensus disorder prediction 168 184 - -
Seca5g01725 841 SMART B3_2 277 378 IPR003340 GO:0003677
Seca5g01725 841 MobiDBLite consensus disorder prediction 745 762 - -
Seca5g01725 841 MobiDBLite consensus disorder prediction 696 764 - -
Seca5g01725 841 MobiDBLite consensus disorder prediction 227 248 - -
Seca5g01725 841 ProSiteProfiles Zinc finger CW-type profile. 541 591 IPR011124 GO:0008270
Seca5g01725 841 Pfam CW-type Zinc Finger 546 588 IPR011124 GO:0008270
Seca5g01725 841 SUPERFAMILY DNA-binding pseudobarrel domain 275 377 IPR015300 -
Seca5g01725 841 MobiDBLite consensus disorder prediction 379 408 - -
Seca5g01725 841 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01725 Seca-Chr5 51227400 51235026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01725 1 814 B3 DNA Binding Superfamily AT2G30470 48.902 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca5g01725 B3 2.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01725 K09287 - gmx:100789848 1330.47