Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01719 ATGGAAGCAGATGTTGGAGAGGATGTGTCAAGGAGGATAATTGATTTGACAACTGATGATATATGGGCATTAGAGTTCTGTAGTGAAAATGATGCGTACAATTTTCACTTTTCTTATGCAAGATGTCATGGATTTGTTGTGAGGAGGGATGATGTACGTCGAGACAATAAAGGAATGCTCATAATGTGGAAGTTTTTATGTACTAGGGCTGGTTTGAGGGACAAAAAGCATTTGATTAGGTTAGATCGAAAAAAAGAACATAGACCTCTTACCCGTACCAATTGTGAAGCTAAGTTGAGAGTTCGGTTTGATTATAAGACATAG 324 0.3765 MEADVGEDVSRRIIDLTTDDIWALEFCSENDAYNFHFSYARCHGFVVRRDDVRRDNKGMLIMWKFLCTRAGLRDKKHLIRLDRKKEHRPLTRTNCEAKLRVRFDYKT. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01719 107 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 10 102 - -
Seca5g01719 107 Pfam FAR1 DNA-binding domain 35 104 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01719 Seca-Chr5 51111486 51111809 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g01719 FAR1 2.3e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01719 - K17604 ccaj:109794460 129.028