Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01708 ATGGTTGTTGTAGGAATACCTTTCATTTTCATATGTGCATTTACTTTGAGTTTAGCTTTTCTCCTCTCAAAATTTCTCTCAAAAGGTCAACCCAAAAATGTTCCAAAAGGGTCTCTGGGGTATCCTATCATCGGAGAGACACTTAGTTTTCTTAAAGCACAGAGGCAAAACAAGGGCTCTGACTGGTTGGAACAACGGACATCTAAGTATGGTACTGTCTTCAAAACCTCCTTAATGGGTTCCCCTACAGTGTTTATCATTGGACAAGCAGGAAACAAGTTTGTCCTCAGTTCCCCAGATGATGTTCTTTCTGCTAAGAAACCCCTCACCCTTCAAAAGATCTTTGGAAGGCAAAGCTTAGTTGAACTTACAGGATCCAGGTACAGGTTAGTCAAAGGGGAAATGATGAAATTCTTGAAACCTGAATGCCTTCAAAACTATGTCAAAGAGATGGATGAGTTGGTGAATACAGAATTACTGAGAGAATTCAAAGAGAATGAAACAATCGGAGTTGTGGAGTTCATGAAGAAGCTGTCCTATGATATGGCATGCAATATATTGTTTGACATTAAGGATGAGAACACTAGGGAGGCTTTGTTTGAAGATTTTATCATAGCATTTAAAGCAATTCACTCTCTTCCCATCAATTTCCCTGGTACCACATTTTGGAGAGGCCAAAGAGCCAGGGAAAGAATCATTGACAGGATACTTCCTATTATGAACAAAAGAAGGGAGGAACTGTCAAAAGGGCTTCTAAGCTCTACTAATGATATGCTTTCTTGCCTTCTTGCATTAAGGGATGAAAATCATCAACCTCTGGCAGATGACATAATTACTGACAATTTTATCTTTTTATTTGTTGCTAGTCATGACACATCTGCTACTCTTATGACCTTGATGATTTGGAAGTTATCAAGAGATCAAGAGGTTTACAATAAAGTTTTAGAAGAACAAATGGAAATCATAAAGCAAAGGGAAGGAACAGAAGACAGGCTAACATGGGCAGATGTACAAAAGATGAAATACACATGGAGAGTTGCTCAGGAATTGATGAGGATGATTCCTCCTTTATTTGGCAGCTTTAGGAAAGCACTTAAAGATACTAGCTACCAAGGATATGACATACCAAAAGGGTGGCAGGTATATTGGGCAGCATATGGAACGCATATGAACAATGATATATTCAAGAATCCACTGAAATTTGATCCATCTCGTTTTGAAACTCCAACCAAGCCAATCCCACCCTTTTCTTACCTTCCTTTTGGTGCAGGGCTTCATTATTGCATAGGAAACGAGTTTGCGAGGGTTGAGACCTTGACTACCATTCACAACTTTATAAAGATGTACGAATGGTCTCAAGTAAACCCAGAGGAACCAATTACTCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATTAAGATCAAACCCAGATCTAATACTATGACTTAG 1455 0.3918 MVVVGIPFIFICAFTLSLAFLLSKFLSKGQPKNVPKGSLGYPIIGETLSFLKAQRQNKGSDWLEQRTSKYGTVFKTSLMGSPTVFIIGQAGNKFVLSSPDDVLSAKKPLTLQKIFGRQSLVELTGSRYRLVKGEMMKFLKPECLQNYVKEMDELVNTELLREFKENETIGVVEFMKKLSYDMACNILFDIKDENTREALFEDFIIAFKAIHSLPINFPGTTFWRGQRARERIIDRILPIMNKRREELSKGLLSSTNDMLSCLLALRDENHQPLADDIITDNFIFLFVASHDTSATLMTLMIWKLSRDQEVYNKVLEEQMEIIKQREGTEDRLTWADVQKMKYTWRVAQELMRMIPPLFGSFRKALKDTSYQGYDIPKGWQVYWAAYGTHMNNDIFKNPLKFDPSRFETPTKPIPPFSYLPFGAGLHYCIGNEFARVETLTTIHNFIKMYEWSQVNPEEPITRQPMPYPSMGLPIKIKPRSNTMT. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01708 484 Pfam Cytochrome P450 35 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS E-class P450 group IV signature 61 84 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS E-class P450 group IV signature 389 407 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS E-class P450 group IV signature 428 446 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS E-class P450 group IV signature 412 428 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS E-class P450 group IV signature 340 356 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 CDD CYP90-like 66 478 - -
Seca5g01708 484 SUPERFAMILY Cytochrome P450 31 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
Seca5g01708 484 Gene3D Cytochrome P450 26 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01708 484 PANTHER CYTOCHROME P450 26 32 468 - -
Seca5g01708 484 FunFam Taxadiene 5-alpha hydroxylase 26 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01708 Seca-Chr5 50990455 50993250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01708 8 454 Cytochrome P450 AT4G19230 33.407 2.62e-74 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01708 - - gmx:100790209 850.121