Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01702 ATGGAAAATCTAGACAGGGACATCTCCGGGTGGATCATGGAATTCCTGCTTCGGAGCTTCGCACCCGATTCCTTGCTCCAGAAAACCCTCACCGCTCTTCCACTCTCCGGCGCCGATTCCCGCCTCAAGAAAACCATCCTCCTCCGCATCCTCCAATCCGAAATCCTCAGAGGCTCCCTCTCCGAAACCGCTCTCCAAATCCTCGAACTCCTCGATGAACTCGACCGAAACGACGCCGTTCCTGTCTCCGACTCCATGCGCCGCGCCTACTGTGCCGTTGCTGTTGAGTGCACCGTCAAGTACCTCATTCACTCCCCCGAAGAGCCCTCCGGCGAATACTTCGCCGCCGTCCGCCGGATCTGGCGCGGCCGAGTCGTCAAGCTTACGGCGGAGGGTCGACGGAGCGAGCTGGTCTCCGGCGAGTTGGAGCGTTGGAGGGACGACTTAGAGGCCGCGCTTTTGGACCCTAAGGTTTCCGAGAGGCTCGCGGGTTTGAACACCAGGTTGGACGCGGTGAACGAGTTGAAGGCATATCTGAAGGAAGCATGGGAAATTATGGGACCTTCGTTTCTCGATTCGGTTGCGATGATGTCGAAGGCGAAGGCATTGCGCCCTGAAGGTGTCTATGAACTTGCACTACCGGCGAGGAAGCGTGATGAAAGGTCAGAGGGTTCTGCGAAGGAGAAAAAGGACTCTGTTGGTGGTGATAGGAATGAATCTTCCGATAGTGATGACGATAATGGTAATGGTAATGATGATGGTGGCGCATGCTGCATGGTCATGGATAATGTGGCAGTGATGGCTAAAAATCAGGGCAAGGAACAAATGAAAGAGAGAATTGGTGCTTCTGTTGATACAATTCAGAAAGTAGGAGGCTGTGACTCTCCTGCTAAGGGAGATAAAGCAATTCAGAAAAACAATCTTCAGCTCAGACGCAAGCACTCTGCACTTCGAGCATGCCATAGGGGAGTTAGAATCTCTGGTTCTGAGGAAGTGGAGCCAGAAAAATCGTGGAGTAAATATGATGATCCCTTGCCAAGTGCTGAAGCTGAAAAAGTTCGGAAGTCCCTTAAATCAAGTTCTTTGGAGTTACGAGCAATGGTCAAGGATCCTCTTCCTGATGCATTACATACGTCTGAAGTTGTAAGATCCAATTTGGCAACTAAAGATATAAATCTTGAGCCACCTATTGAAAACCGGAGTGGAGATGTAGATGTACCAGATCAAGATGTTTGCAAGAGCATTGTACTTTATCAGCCTAATGATGCCAATCTTGGGAAGAAGTCTCCTGTTAATTGTAGTAATGTTCATCACCCCAGCTTAATGAAACGGAAAAGTACTGCTCGTACTTGTGAGTGGGTTGATTCAATAGATAACTTGCCACGAGGGACACAGCCAAGAAGGAGGAAAAGGAAATGGAGTACATTGGAAGAGGAGAAACTAAGGGATGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACAATCCGAAATTTTTACAGTAACATATTTGAAAATAGAAGTGGAGTTGATCTAAAGGACAAGTGGAGAAACATGATACGGTGA 1566 0.4879 MENLDRDISGWIMEFLLRSFAPDSLLQKTLTALPLSGADSRLKKTILLRILQSEILRGSLSETALQILELLDELDRNDAVPVSDSMRRAYCAVAVECTVKYLIHSPEEPSGEYFAAVRRIWRGRVVKLTAEGRRSELVSGELERWRDDLEAALLDPKVSERLAGLNTRLDAVNELKAYLKEAWEIMGPSFLDSVAMMSKAKALRPEGVYELALPARKRDERSEGSAKEKKDSVGGDRNESSDSDDDNGNGNDDGGACCMVMDNVAVMAKNQGKEQMKERIGASVDTIQKVGGCDSPAKGDKAIQKNNLQLRRKHSALRACHRGVRISGSEEVEPEKSWSKYDDPLPSAEAEKVRKSLKSSSLELRAMVKDPLPDALHTSEVVRSNLATKDINLEPPIENRSGDVDVPDQDVCKSIVLYQPNDANLGKKSPVNCSNVHHPSLMKRKSTARTCEWVDSIDNLPRGTQPRRRKRKWSTLEEEKLRDGVKMFGEGNWATIRNFYSNIFENRSGVDLKDKWRNMIR. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01702 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 465 521 IPR017930 -
Seca5g01702 521 MobiDBLite consensus disorder prediction 214 244 - -
Seca5g01702 521 MobiDBLite consensus disorder prediction 214 255 - -
Seca5g01702 521 SUPERFAMILY Homeodomain-like 466 520 IPR009057 -
Seca5g01702 521 CDD SANT_TRF 471 521 - -
Seca5g01702 521 Gene3D - 463 521 - -
Seca5g01702 521 ProSiteProfiles Myb-like domain profile. 465 520 IPR001005 -
Seca5g01702 521 PANTHER MYB TRANSCRIPTION FACTOR 6 521 - -
Seca5g01702 521 SMART sant 469 521 IPR001005 -
Seca5g01702 521 Pfam Myb-like DNA-binding domain 470 519 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01702 Seca-Chr5 50867169 50871759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01702 473 520 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 7.75e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g01702 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01702 - K11111 aprc:113849788 619.002