Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01699 ATGACCAGAAAAAAGGTGAAACTAGCATTCATAGTCAATGACGCTGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTCTGTTGAAAAAGGTGGATGAACTAAGCACCCTTTGTGGCATTGAAGCTTGTGCTATAGTTTATAGCCCTTATGATCCTGAAGCAGTGGTTTGGCCATCCCCATTGGGTGTCCAAAGGGTGTTGTCTAGGTTCAGAAATATGTCTGAAATGGAGCAGGGCAAGAAGATGATGGATCAAGAGACTTTCTTGAAAGAAAGGATTTTGAAGGCTAAAGAGCATGTGAGGAAGCAGAAGAAGGACAACAGGGAGAAGGAGATGGCCCTGCTTATGTTTCAATGTCTTGATGTTGGGGAGCTTGTGCAAAAAAATATGAACACAAGTGATTTGAATGATTTTGTGTGGTTGATTGACCAGAACATGAAGAATGTTGGTCGAAGGTTGGAAACACTAGATGAGAATGCTCAGACACATGTGATTGCTCCAAGCCAAGTCCAAATGGTACCACCAGCACTGGCAATAGCCAAGAATGAAGAAATGACAATGGAGGATCATTTTCATGGCTATGGATTGCATATAAATGCTGACACCTTGCAGAGGCAGTGGTATACAAACATGGTCAATAGTAATGGGGATCAGACCATGCCATTGGGAGATGCCAATCTCCAAAATGGCTTCTGGGTTAACCCATTGCCTTGA 717 0.4296 MTRKKVKLAFIVNDAARKATYKKRKKGLLKKVDELSTLCGIEACAIVYSPYDPEAVVWPSPLGVQRVLSRFRNMSEMEQGKKMMDQETFLKERILKAKEHVRKQKKDNREKEMALLMFQCLDVGELVQKNMNTSDLNDFVWLIDQNMKNVGRRLETLDENAQTHVIAPSQVQMVPPALAIAKNEEMTMEDHFHGYGLHINADTLQRQWYTNMVNSNGDQTMPLGDANLQNGFWVNPLP. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01699 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g01699 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g01699 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca5g01699 238 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Seca5g01699 238 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Seca5g01699 238 PANTHER MADS BOX PROTEIN 3 132 - -
Seca5g01699 238 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca5g01699 238 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Seca5g01699 238 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Seca5g01699 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01699 Seca-Chr5 50808591 50809307 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01699 1 171 Type I MADS-box Gene Family AT5G48670 60.234 6.50e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g01699 SRF-TF 6.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01699 - - gmx:100813231 259.996